{"id":"https://openalex.org/W4416242333","doi":"https://doi.org/10.21105/joss.09720","title":"Cardiotensor: A Python Library for Orientation Analysis and Tractography in 3D Cardiac Imaging","display_name":"Cardiotensor: A Python Library for Orientation Analysis and Tractography in 3D Cardiac Imaging","publication_year":2026,"publication_date":"2026-05-02","ids":{"openalex":"https://openalex.org/W4416242333","doi":"https://doi.org/10.21105/joss.09720"},"language":"en","primary_location":{"id":"doi:10.21105/joss.09720","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09720","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.21105/joss.09720","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004533558","display_name":"Joseph Brunet","orcid":"https://orcid.org/0000-0002-8424-9510"},"institutions":[{"id":"https://openalex.org/I2801997478","display_name":"European Synchrotron Radiation Facility","ror":"https://ror.org/02550n020","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2801997478"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Joseph Brunet","raw_affiliation_strings":["Department of Mechanical Engineering, University College London, London, UK","European Synchrotron Radiation Facility, Grenoble, France"],"raw_orcid":"https://orcid.org/0000-0002-8424-9510","affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"European Synchrotron Radiation Facility, Grenoble, France","institution_ids":["https://openalex.org/I2801997478"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120499149","display_name":"Lisa Chestnutt","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lisa Chestnutt","raw_affiliation_strings":["UCL Institute of Cardiovascular Science, London, UK"],"raw_orcid":"https://orcid.org/0009-0008-0783-7299","affiliations":[{"raw_affiliation_string":"UCL Institute of Cardiovascular Science, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036365645","display_name":"Matthieu Chourrout","orcid":"https://orcid.org/0000-0002-2282-6976"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthieu Chourrout","raw_affiliation_strings":["Department of Mechanical Engineering, University College London, London, UK"],"raw_orcid":"https://orcid.org/0000-0002-2282-6976","affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036882097","display_name":"Hector Dejea","orcid":"https://orcid.org/0000-0003-2584-9812"},"institutions":[{"id":"https://openalex.org/I2801997478","display_name":"European Synchrotron Radiation Facility","ror":"https://ror.org/02550n020","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2801997478"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hector Dejea","raw_affiliation_strings":["European Synchrotron Radiation Facility, Grenoble, France"],"raw_orcid":"https://orcid.org/0000-0003-2584-9812","affiliations":[{"raw_affiliation_string":"European Synchrotron Radiation Facility, Grenoble, France","institution_ids":["https://openalex.org/I2801997478"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029969312","display_name":"Vaishnavi Sabarigirivasan","orcid":"https://orcid.org/0000-0003-2550-6262"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Vaishnavi Sabarigirivasan","raw_affiliation_strings":["UCL Division of Medicine, University College London, London, UK","UCL Institute of Cardiovascular Science, London, UK"],"raw_orcid":"https://orcid.org/0000-0003-2550-6262","affiliations":[{"raw_affiliation_string":"UCL Division of Medicine, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL Institute of Cardiovascular Science, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100354178","display_name":"Peter Lee","orcid":"https://orcid.org/0000-0002-3898-8881"},"institutions":[{"id":"https://openalex.org/I4210092957","display_name":"Research Complex at Harwell","ror":"https://ror.org/00gqx0331","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210092957"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter D. Lee","raw_affiliation_strings":["Department of Mechanical Engineering, University College London, London, UK","Research Complex at Harwell, Didcot, UK"],"raw_orcid":"https://orcid.org/0000-0002-3898-8881","affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Research Complex at Harwell, Didcot, UK","institution_ids":["https://openalex.org/I4210092957"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036191036","display_name":"Andrew C. Cook","orcid":"https://orcid.org/0000-0001-5079-7546"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew C. Cook","raw_affiliation_strings":["UCL Institute of Cardiovascular Science, London, UK"],"raw_orcid":"https://orcid.org/0000-0001-5079-7546","affiliations":[{"raw_affiliation_string":"UCL Institute of Cardiovascular Science, London, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00832147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"11","issue":"121","first_page":"9720","last_page":"9720"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.6086999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.6086999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.1867000013589859,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11366","display_name":"Elasticity and Material Modeling","score":0.025200000032782555,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8849999904632568},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7074999809265137},{"id":"https://openalex.org/keywords/tractography","display_name":"Tractography","score":0.6477000117301941},{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.557200014591217},{"id":"https://openalex.org/keywords/diffusion-mri","display_name":"Diffusion MRI","score":0.5285999774932861},{"id":"https://openalex.org/keywords/cardiac-imaging","display_name":"Cardiac imaging","score":0.4551999866962433},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.35269999504089355}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8849999904632568},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7074999809265137},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6589999794960022},{"id":"https://openalex.org/C84787856","wikidata":"https://www.wikidata.org/wiki/Q3076659","display_name":"Tractography","level":4,"score":0.6477000117301941},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.557200014591217},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5548999905586243},{"id":"https://openalex.org/C149550507","wikidata":"https://www.wikidata.org/wiki/Q899360","display_name":"Diffusion MRI","level":3,"score":0.5285999774932861},{"id":"https://openalex.org/C2776127602","wikidata":"https://www.wikidata.org/wiki/Q5038319","display_name":"Cardiac imaging","level":2,"score":0.4551999866962433},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.41769999265670776},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.35269999504089355},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3174000084400177},{"id":"https://openalex.org/C155281189","wikidata":"https://www.wikidata.org/wiki/Q3518150","display_name":"Tensor (intrinsic definition)","level":2,"score":0.29989999532699585},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.2915000021457672},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.28619998693466187},{"id":"https://openalex.org/C3018686881","wikidata":"https://www.wikidata.org/wiki/Q10334846","display_name":"Cardiac myocyte","level":3,"score":0.2824000120162964},{"id":"https://openalex.org/C89916169","wikidata":"https://www.wikidata.org/wiki/Q17014600","display_name":"Fractional anisotropy","level":4,"score":0.27630001306533813},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2587999999523163}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.21105/joss.09720","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09720","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:2508.07476","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2508.07476","pdf_url":"https://arxiv.org/pdf/2508.07476","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:doi:10.5281/zenodo.19444615","is_oa":true,"landing_page_url":"https://github.com/JosephBrunet/cardiotensor/tree/v1.1.9","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.48550/arxiv.2508.07476","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2508.07476","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"},{"id":"doi:10.5281/zenodo.19444615","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19444615","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.5281/zenodo.19444616","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19444616","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.5281/zenodo.20091372","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.20091372","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.21105/joss.09720","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09720","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Cardiotensor":[0],"is":[1],"an":[2],"open-source":[3],"Python":[4],"package":[5],"designed":[6],"to":[7],"quantify":[8],"3D":[9],"cardiomyocyte":[10],"orientation":[11],"in":[12],"whole-":[13],"or":[14],"partial-heart":[15],"imaging":[16],"datasets.":[17],"It":[18],"provides":[19],"scalable":[20],"implementations":[21],"of":[22,33],"structure":[23],"tensor":[24],"analysis":[25],"and":[26,44],"tractography":[27],"for":[28],"teravoxel-scale":[29],"datasets,":[30],"enabling":[31],"extraction":[32],"directional":[34],"metrics":[35],"such":[36],"as":[37],"helical":[38],"angle":[39,42],"(HA),":[40],"intrusion":[41],"(IA),":[43],"fractional":[45],"anisotropy":[46],"(FA).":[47]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
