{"id":"https://openalex.org/W7126079224","doi":"https://doi.org/10.21105/joss.09343","title":"OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis","display_name":"OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis","publication_year":2026,"publication_date":"2026-01-29","ids":{"openalex":"https://openalex.org/W7126079224","doi":"https://doi.org/10.21105/joss.09343"},"language":null,"primary_location":{"id":"doi:10.21105/joss.09343","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09343","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.09343.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.09343.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068144624","display_name":"Koki Tsuyuzaki","orcid":"https://orcid.org/0000-0003-3797-2148"},"institutions":[{"id":"https://openalex.org/I159385669","display_name":"Chiba University","ror":"https://ror.org/01hjzeq58","country_code":"JP","type":"education","lineage":["https://openalex.org/I159385669"]},{"id":"https://openalex.org/I4210116810","display_name":"RIKEN Center for Biosystems Dynamics Research","ror":"https://ror.org/023rffy11","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210116810"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Koki Tsuyuzaki","raw_affiliation_strings":["Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Japan","Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research, Japan"],"raw_orcid":"https://orcid.org/0000-0003-3797-2148","affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Japan","institution_ids":["https://openalex.org/I159385669"]},{"raw_affiliation_string":"Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research, Japan","institution_ids":["https://openalex.org/I4210116810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5068144624"],"corresponding_institution_ids":["https://openalex.org/I159385669","https://openalex.org/I4210116810"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20833333,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"11","issue":"117","first_page":"9343","last_page":"9343"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12303","display_name":"Tensor decomposition and applications","score":0.049800001084804535,"subfield":{"id":"https://openalex.org/subfields/2605","display_name":"Computational Mathematics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12303","display_name":"Tensor decomposition and applications","score":0.049800001084804535,"subfield":{"id":"https://openalex.org/subfields/2605","display_name":"Computational Mathematics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.02930000051856041,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.028599999845027924,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.6654000282287598},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6043000221252441},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.4027999937534332},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3328000009059906}],"concepts":[{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.6654000282287598},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6194999814033508},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6043000221252441},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5374000072479248},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.4027999937534332},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3806999921798706},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3671000003814697},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3328000009059906},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2732999920845032},{"id":"https://openalex.org/C56372850","wikidata":"https://www.wikidata.org/wiki/Q1050404","display_name":"Sparse matrix","level":3,"score":0.2410999983549118}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.09343","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09343","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.09343.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.09343","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09343","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.09343.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7126079224.pdf","grobid_xml":"https://content.openalex.org/works/W7126079224.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1985909941","https://openalex.org/W2133148918","https://openalex.org/W2142254043","https://openalex.org/W2292301738","https://openalex.org/W2307267906","https://openalex.org/W2950245999","https://openalex.org/W3001040093","https://openalex.org/W4310588997","https://openalex.org/W4386122262"],"related_works":[],"abstract_inverted_index":{"Principal":[0],"Component":[1],"Analysis":[2],"(PCA)":[3],"is":[4,43],"a":[5,44],"widely":[6],"used":[7],"dimensionality":[8],"reduction":[9],"technique":[10],"(Meng,":[11],"2016;Stein-O'Brien,":[12],"2018),":[13],"but":[14],"becomes":[15],"computationally":[16],"prohibitive":[17],"for":[18,34],"large":[19],"data":[20],"matrices.Recent":[21],"advances":[22],"in":[23],"single-cell":[24],"omics":[25],"have":[26],"led":[27],"to":[28,41],"datasets":[29],"with":[30],"millions":[31],"of":[32],"cells,":[33],"which":[35],"standard":[36],"PCA":[37,54],"implementations":[38],"often":[39],"fail":[40],"scale.OnlinePCA.jl":[42],"Julia":[45],"package":[46],"that":[47],"addresses":[48],"this":[49],"challenge":[50],"by":[51],"providing":[52],"scalable":[53],"algorithms":[55],"(https://github.com/rikenbit/OnlinePCA.jl).":[56]},"counts_by_year":[],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2026-01-30T00:00:00"}
