{"id":"https://openalex.org/W7140133685","doi":"https://doi.org/10.21105/joss.09218","title":"Tissue Data Explorer: a website template for presenting tissue sample research findings","display_name":"Tissue Data Explorer: a website template for presenting tissue sample research findings","publication_year":2026,"publication_date":"2026-03-23","ids":{"openalex":"https://openalex.org/W7140133685","doi":"https://doi.org/10.21105/joss.09218"},"language":null,"primary_location":{"id":"doi:10.21105/joss.09218","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09218","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.09218.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.09218.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5125392937","display_name":"James A. Labyer","orcid":null},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James A. Labyer","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, United States of America"],"affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, United States of America","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090195616","display_name":"Erik Ferlanti","orcid":"https://orcid.org/0000-0001-5128-1584"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Ferlanti","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, United States of America"],"affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, United States of America","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012032972","display_name":"M. Campbell-Thompson","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martha Campbell-Thompson","raw_affiliation_strings":["Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, United States of America","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076723404","display_name":"Clayton E. Mathews","orcid":"https://orcid.org/0000-0002-8817-6355"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Clayton E. Mathews","raw_affiliation_strings":["Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, United States of America","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130347490","display_name":"Wei-Jun Qian","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei-Jun Qian","raw_affiliation_strings":["Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States of America"],"affiliations":[{"raw_affiliation_string":"Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States of America","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078550956","display_name":"James P. Carson","orcid":"https://orcid.org/0000-0001-9009-5645"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James P. Carson","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, United States of America"],"affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, United States of America","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5125392937"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.79155834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"11","issue":"119","first_page":"9218","last_page":"9218"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4104999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4104999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.19009999930858612,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.06780000030994415,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6462000012397766},{"id":"https://openalex.org/keywords/tissue-sample","display_name":"Tissue sample","score":0.45719999074935913},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.3573000133037567},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32820001244544983},{"id":"https://openalex.org/keywords/large-sample","display_name":"Large sample","score":0.26170000433921814}],"concepts":[{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6462000012397766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5810999870300293},{"id":"https://openalex.org/C3019482985","wikidata":"https://www.wikidata.org/wiki/Q7410159","display_name":"Tissue sample","level":2,"score":0.45719999074935913},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4174000024795532},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.3573000133037567},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3465999960899353},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33309999108314514},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32820001244544983},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3068000078201294},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.30469998717308044},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2822999954223633},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.26739999651908875},{"id":"https://openalex.org/C3020318244","wikidata":"https://www.wikidata.org/wiki/Q4812187","display_name":"Large sample","level":2,"score":0.26170000433921814},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.26019999384880066}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.09218","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09218","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.09218.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.09218","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.09218","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.09218.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G203395936","display_name":null,"funder_award_id":"U54DK127823","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6702208229","display_name":null,"funder_award_id":"U54DK127823","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320338403","display_name":"Common Fund","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7140133685.pdf","grobid_xml":"https://content.openalex.org/works/W7140133685.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2045791404","https://openalex.org/W2132716228","https://openalex.org/W3114116708","https://openalex.org/W3128076107","https://openalex.org/W4311311280","https://openalex.org/W4384819322","https://openalex.org/W4388581233","https://openalex.org/W6968063462"],"related_works":[],"abstract_inverted_index":{"The":[0],"Tissue":[1,34],"Data":[2,35],"Explorer":[3,36],"is":[4,99,119,130,142,153],"a":[5,15],"Python":[6,128],"code":[7],"repository":[8,84],"that":[9,24],"can":[10,70,81],"be":[11,122],"used":[12],"to":[13,65,89,113,121],"deploy":[14,71],"website":[16,76,98],"for":[17,39,124],"displaying":[18,42],"2D":[19],"and":[20,41,63,85],"3D":[21,57],"biomolecular":[22],"datasets":[23],"have":[25],"been":[26],"collected":[27],"from":[28,32,50],"tissue":[29,55,61],"samples":[30],"taken":[31,49],"organs.The":[33],"includes":[37],"interfaces":[38,88],"loading":[40],"image":[43],"stacks,":[44],"spatial":[45],"maps":[46],"of":[47,59,74,170],"measurements":[48],"different":[51],"areas":[52],"within":[53],"the":[54,60,75,83,87,97,102,167],"sample,":[56,62],"models":[58],"links":[64],"custom":[66],"reports.Life":[67],"sciences":[68,134,174],"researchers":[69,135,175],"an":[72],"instance":[73],"as":[77],"is,":[78],"or":[79],"they":[80],"fork":[82],"modify":[86],"accommodate":[90],"additional":[91],"data":[92],"types.To":[93],"enable":[94],"easier":[95,123],"customization,":[96],"written":[100],"using":[101,116],"Plotly":[103],"Dash":[104],"visualization":[105],"framework":[106],"(Parmer":[107],"et":[108,137],"al.,":[109,138],"2024).Dash":[110],"allows":[111],"users":[112],"build":[114],"visuals":[115],"Python,":[117],"which":[118,152],"likely":[120],"many":[125],"biologists":[126],"because":[127],"knowledge":[129],"common":[131,147],"among":[132,155],"life":[133,173],"(Mariano":[136],"2020)":[139],"(Boudreau,":[140],"2021).This":[141],"in":[143],"contrast":[144],"with":[145,172],"other":[146],"web":[148],"languages":[149],"like":[150],"JavaScript,":[151],"popular":[154],"software":[156],"developers":[157],"(\"Stack":[158],"Overflow":[159],"Developer":[160],"Survey,\"":[161],"2024)":[162],"but":[163],"has":[164],"not":[165],"achieved":[166],"same":[168],"level":[169],"adoption":[171],"(Sorani,":[176],"2012).":[177]},"counts_by_year":[],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2026-03-24T00:00:00"}
