{"id":"https://openalex.org/W7130723179","doi":"https://doi.org/10.21105/joss.08993","title":"MeDUSA: Taming your metabolic datasets using an R-package for data processing of Direct Infusion Untarged Single-cell Analysis","display_name":"MeDUSA: Taming your metabolic datasets using an R-package for data processing of Direct Infusion Untarged Single-cell Analysis","publication_year":2026,"publication_date":"2026-02-20","ids":{"openalex":"https://openalex.org/W7130723179","doi":"https://doi.org/10.21105/joss.08993"},"language":null,"primary_location":{"id":"doi:10.21105/joss.08993","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.08993","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.08993.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.08993.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5122288351","display_name":"Laura Ann Castaneda","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Laura Ann Castaneda","raw_affiliation_strings":["Leiden University, Leiden, Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden University, Leiden, Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122271285","display_name":"Eric Hetzel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric Hetzel","raw_affiliation_strings":["Independent Researcher, Netherlands"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":null,"display_name":"Ahmed Ali","orcid":"https://orcid.org/0000-0003-2157-4399"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ahmed Ali","raw_affiliation_strings":["Leiden University, Leiden, Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden University, Leiden, Netherlands","institution_ids":["https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5122288351"],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.43609451,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"11","issue":"118","first_page":"8993","last_page":"8993"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6072999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6072999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.1657000035047531,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.014700000174343586,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.4668000042438507},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.3612000048160553},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.2937999963760376},{"id":"https://openalex.org/keywords/data-source","display_name":"Data source","score":0.24719999730587006},{"id":"https://openalex.org/keywords/data-analysis","display_name":"Data analysis","score":0.24469999969005585}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6811000108718872},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49869999289512634},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.4668000042438507},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.3612000048160553},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31949999928474426},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2937999963760376},{"id":"https://openalex.org/C2983685735","wikidata":"https://www.wikidata.org/wiki/Q5227355","display_name":"Data source","level":2,"score":0.24719999730587006},{"id":"https://openalex.org/C175801342","wikidata":"https://www.wikidata.org/wiki/Q1988917","display_name":"Data analysis","level":2,"score":0.24469999969005585},{"id":"https://openalex.org/C2781170535","wikidata":"https://www.wikidata.org/wiki/Q30587856","display_name":"Noisy data","level":2,"score":0.2240000069141388},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.21250000596046448}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.08993","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.08993","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.08993.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.08993","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.08993","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.08993.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2689612763","display_name":null,"funder_award_id":"Marie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5743557651","display_name":null,"funder_award_id":"861196","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7130723179.pdf","grobid_xml":"https://content.openalex.org/works/W7130723179.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1964010911","https://openalex.org/W2114416030","https://openalex.org/W2574393842","https://openalex.org/W2790561925","https://openalex.org/W3159995035","https://openalex.org/W4392234958"],"related_works":[],"abstract_inverted_index":{"Castaneda":[0],"et":[1],"al.,":[2],"(2026).":[3],"MeDUSA:":[4],"Taming":[5],"your":[6],"metabolic":[7],"datasets":[8],"using":[9],"an":[10],"R-package":[11],"for":[12],"data":[13],"processing":[14],"of":[15,22],"Direct":[16],"Infusion":[17],"Untarged":[18],"Single-cell":[19],"Analysis.":[20],"Journal":[21],"Open":[23],"Source":[24],"Software,":[25],"11(118),":[26],"8993,":[27],"https://doi.org/10.21105/joss.08993":[28]},"counts_by_year":[],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2026-02-21T00:00:00"}
