{"id":"https://openalex.org/W4417149203","doi":"https://doi.org/10.21105/joss.08319","title":"p2smi: A toolkit enabling SMILES generation and property analysis for noncanonical and cyclized peptides","display_name":"p2smi: A toolkit enabling SMILES generation and property analysis for noncanonical and cyclized peptides","publication_year":2025,"publication_date":"2025-12-09","ids":{"openalex":"https://openalex.org/W4417149203","doi":"https://doi.org/10.21105/joss.08319"},"language":null,"primary_location":{"id":"doi:10.21105/joss.08319","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.08319","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.08319.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.08319.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020473978","display_name":"Aaron L. Feller","orcid":"https://orcid.org/0000-0002-4476-1026"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aaron L. Feller","raw_affiliation_strings":["Department of Interdisciplinary Life Sciences, The University of Texas at Austin, Austin, TX, United States"],"affiliations":[{"raw_affiliation_string":"Department of Interdisciplinary Life Sciences, The University of Texas at Austin, Austin, TX, United States","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070411498","display_name":"Claus O. Wilke","orcid":"https://orcid.org/0000-0002-7470-9261"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Claus O. Wilke","raw_affiliation_strings":["Department of Integrative Biology, The University of Texas at Austin, Austin, TX, United States","Department of Interdisciplinary Life Sciences, The University of Texas at Austin, Austin, TX, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Biology, The University of Texas at Austin, Austin, TX, United States","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"Department of Interdisciplinary Life Sciences, The University of Texas at Austin, Austin, TX, United States","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5020473978"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.34577794,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"116","first_page":"8319","last_page":"8319"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.23240000009536743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.23240000009536743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.13910000026226044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.08510000258684158,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.7986999750137329},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.3587000072002411},{"id":"https://openalex.org/keywords/third-generation","display_name":"Third generation","score":0.30320000648498535},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.24940000474452972}],"concepts":[{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.7986999750137329},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6640999913215637},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4375},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3910999894142151},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.3587000072002411},{"id":"https://openalex.org/C3018907156","wikidata":"https://www.wikidata.org/wiki/Q7785058","display_name":"Third generation","level":2,"score":0.30320000648498535},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2964000105857849},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2782000005245209},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.24940000474452972},{"id":"https://openalex.org/C195818886","wikidata":"https://www.wikidata.org/wiki/Q5421724","display_name":"Expressive power","level":2,"score":0.23749999701976776}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.08319","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.08319","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.08319.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.08319","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.08319","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.08319.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4143332889","display_name":null,"funder_award_id":"AI148419","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4866851767","display_name":null,"funder_award_id":"R01 AI148419","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310620","display_name":"University of Texas at Austin","ror":"https://ror.org/00hj54h04"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4417149203.pdf","grobid_xml":"https://content.openalex.org/works/W4417149203.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1987305898","https://openalex.org/W2016447529","https://openalex.org/W2038594932","https://openalex.org/W2048347251","https://openalex.org/W2072953968","https://openalex.org/W2114850508","https://openalex.org/W2169678694","https://openalex.org/W2909063104","https://openalex.org/W4386636681","https://openalex.org/W4406136053","https://openalex.org/W4406182978","https://openalex.org/W4406197632"],"related_works":[],"abstract_inverted_index":{"Feller":[0],"et":[1],"al.,":[2],"(2025).":[3],"p2smi:":[4],"A":[5],"toolkit":[6],"enabling":[7],"SMILES":[8],"generation":[9],"and":[10,15],"property":[11],"analysis":[12],"for":[13],"noncanonical":[14],"cyclized":[16],"peptides.":[17],"Journal":[18],"of":[19],"Open":[20],"Source":[21],"Software,":[22],"10(116),":[23],"8319,":[24],"https://doi.org/10.21105/joss.08319":[25]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-12-09T00:00:00"}
