{"id":"https://openalex.org/W4402867994","doi":"https://doi.org/10.21105/joss.06934","title":"alchemlyb: the simple alchemistry library","display_name":"alchemlyb: the simple alchemistry library","publication_year":2024,"publication_date":"2024-09-26","ids":{"openalex":"https://openalex.org/W4402867994","doi":"https://doi.org/10.21105/joss.06934","pmid":"https://pubmed.ncbi.nlm.nih.gov/40821606"},"language":"en","primary_location":{"id":"doi:10.21105/joss.06934","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.06934","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.21105/joss.06934","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016921524","display_name":"Zhiyi Wu","orcid":"https://orcid.org/0000-0002-7615-7851"},"institutions":[{"id":"https://openalex.org/I2802626578","display_name":"Oxford University Press (United Kingdom)","ror":"https://ror.org/0336mm561","country_code":"GB","type":"company","lineage":["https://openalex.org/I2802626578","https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zhiyi Wu","raw_affiliation_strings":["Exscientia plc, Schroedinger Building, Oxford, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-7615-7851","affiliations":[{"raw_affiliation_string":"Exscientia plc, Schroedinger Building, Oxford, United Kingdom","institution_ids":["https://openalex.org/I2802626578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039860950","display_name":"David Dotson","orcid":"https://orcid.org/0000-0001-5879-2942"},"institutions":[{"id":"https://openalex.org/I4210152671","display_name":"Ping (United States)","ror":"https://ror.org/040wmvn07","country_code":"US","type":"company","lineage":["https://openalex.org/I4210152671"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David L. Dotson","raw_affiliation_strings":["Datryllic LLC, Phoenix, Arizona, United States of America (present affiliation)","Department of Physics, Arizona State University, Tempe, Arizona, United States of America","ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, \u00c9tats-Unis - United States)"],"raw_orcid":"https://orcid.org/0000-0001-5879-2942","affiliations":[{"raw_affiliation_string":"Datryllic LLC, Phoenix, Arizona, United States of America (present affiliation)","institution_ids":["https://openalex.org/I4210152671"]},{"raw_affiliation_string":"Department of Physics, Arizona State University, Tempe, Arizona, United States of America","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, \u00c9tats-Unis - United States)","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019650412","display_name":"Irfan Alibay","orcid":"https://orcid.org/0000-0001-5787-9130"},"institutions":[{"id":"https://openalex.org/I40695006","display_name":"Open Geospatial Consortium","ror":"https://ror.org/00fsdxs93","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I40695006"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Irfan Alibay","raw_affiliation_strings":["Open Free Energy, Open Molecular Software Foundation, Davis, California, United States"],"raw_orcid":"https://orcid.org/0000-0001-5787-9130","affiliations":[{"raw_affiliation_string":"Open Free Energy, Open Molecular Software Foundation, Davis, California, United States","institution_ids":["https://openalex.org/I40695006"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004009215","display_name":"Bryce K. Allen","orcid":"https://orcid.org/0000-0002-0804-8127"},"institutions":[{"id":"https://openalex.org/I4210103611","display_name":"Mirati Therapeutics (United States)","ror":"https://ror.org/01by01460","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103611"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryce K. Allen","raw_affiliation_strings":["Differentiated Therapeutics, San Diego, CA"],"raw_orcid":"https://orcid.org/0000-0002-0804-8127","affiliations":[{"raw_affiliation_string":"Differentiated Therapeutics, San Diego, CA","institution_ids":["https://openalex.org/I4210103611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024093137","display_name":"Mohammad Soroush Barhaghi","orcid":"https://orcid.org/0000-0001-8226-7347"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Soroush Barhaghi","raw_affiliation_strings":["Department of Chemical Engineering and Materials Science, Wayne State University, Detroit, Michigan, United States of America","Wayne State University [Detroit] (Detroit, Michigan, United States - United States)"],"raw_orcid":"https://orcid.org/0000-0001-8226-7347","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering and Materials Science, Wayne State University, Detroit, Michigan, United States of America","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Wayne State University [Detroit] (Detroit, Michigan, United States - United States)","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016364652","display_name":"J\u00e9r\u00f4me H\u00e9nin","orcid":"https://orcid.org/0000-0003-2540-4098"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J\u00e9r\u00f4me H\u00e9nin","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, CNRS, Laboratoire de Biochimie Th\u00e9orique, Paris, France","IBPC (FR_550) - Institut de biologie physico-chimique (13 Rue Pierre et Marie Curie 75005 PARIS - France)","LBT (UPR_9080) - Laboratoire de biochimie th\u00e9orique [Paris] (13 Rue Pierre et Marie Curie 75005 PARIS - France)"],"raw_orcid":"https://orcid.org/0000-0003-2540-4098","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, CNRS, Laboratoire de Biochimie Th\u00e9orique, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"IBPC (FR_550) - Institut de biologie physico-chimique (13 Rue Pierre et Marie Curie 75005 PARIS - France)","institution_ids":["https://openalex.org/I4210107423"]},{"raw_affiliation_string":"LBT (UPR_9080) - Laboratoire de biochimie th\u00e9orique [Paris] (13 Rue Pierre et Marie Curie 75005 PARIS - France)","institution_ids":["https://openalex.org/I4210094297"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079067783","display_name":"Thomas T. Joseph","orcid":"https://orcid.org/0000-0003-1323-3244"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas T. Joseph","raw_affiliation_strings":["Department of Anesthesiology and Critical Care, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","University of Pennsylvania (3451 Walnut Street, Philadelphia, PA 19104 | 215-898-5000 - United States)"],"raw_orcid":"https://orcid.org/0000-0003-1323-3244","affiliations":[{"raw_affiliation_string":"Department of Anesthesiology and Critical Care, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"University of Pennsylvania (3451 Walnut Street, Philadelphia, PA 19104 | 215-898-5000 - United States)","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014776905","display_name":"Ian M. Kenney","orcid":"https://orcid.org/0000-0002-9749-8866"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ian M. Kenney","raw_affiliation_strings":["Department of Physics, Arizona State University, Tempe, Arizona, United States of America","ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, \u00c9tats-Unis - United States)"],"raw_orcid":"https://orcid.org/0000-0002-9749-8866","affiliations":[{"raw_affiliation_string":"Department of Physics, Arizona State University, Tempe, Arizona, United States of America","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, \u00c9tats-Unis - United States)","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010460625","display_name":"Hyungro Lee","orcid":"https://orcid.org/0000-0002-4221-7094"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyungro Lee","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, Washington, United States of America","PNNL - Pacific Northwest National Laboratory (Richland, WA 99352 - United States)"],"raw_orcid":"https://orcid.org/0000-0002-4221-7094","affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, Washington, United States of America","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"PNNL - Pacific Northwest National Laboratory (Richland, WA 99352 - United States)","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089322918","display_name":"Haoxi Li","orcid":"https://orcid.org/0009-0004-8369-1042"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I1333535994","display_name":"University of North Carolina Health Care","ror":"https://ror.org/00qz24g20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1333535994"]},{"id":"https://openalex.org/I4210158053","display_name":"University of North Carolina System","ror":"https://ror.org/0566a8c54","country_code":"US","type":"education","lineage":["https://openalex.org/I4210158053"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haoxi Li","raw_affiliation_strings":["UNC Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, NC, United States of America","UNC - University of North Carolina System (United States)"],"raw_orcid":"https://orcid.org/0009-0004-8369-1042","affiliations":[{"raw_affiliation_string":"UNC Eshelman School of Pharmacy, University of North Carolina, Chapel Hill, NC, United States of America","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I1333535994"]},{"raw_affiliation_string":"UNC - University of North Carolina System (United States)","institution_ids":["https://openalex.org/I4210158053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059672458","display_name":"Victoria T. Lim","orcid":"https://orcid.org/0000-0003-4030-9312"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]},{"id":"https://openalex.org/I4210140791","display_name":"Irvine University","ror":"https://ror.org/04ysmca02","country_code":"US","type":"education","lineage":["https://openalex.org/I4210140791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victoria Lim","raw_affiliation_strings":["Departments of Pharmaceutical Sciences and Chemistry, University of California Irvine, Irvine, California, United States of America","UC Irvine - University of California [Irvine] (Irvine, CA 92697 - United States)"],"raw_orcid":"https://orcid.org/0000-0003-4030-9312","affiliations":[{"raw_affiliation_string":"Departments of Pharmaceutical Sciences and Chemistry, University of California Irvine, Irvine, California, United States of America","institution_ids":["https://openalex.org/I204250578","https://openalex.org/I4210140791"]},{"raw_affiliation_string":"UC Irvine - University of California [Irvine] (Irvine, CA 92697 - United States)","institution_ids":["https://openalex.org/I204250578","https://openalex.org/I4210140791"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shuai Liu","orcid":"https://orcid.org/0000-0002-8632-633X"},"institutions":[{"id":"https://openalex.org/I4210094840","display_name":"Silicon Therapeutics (United States)","ror":"https://ror.org/00rbf3t83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210094840"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuai Liu","raw_affiliation_strings":["Silicon Therapeutics LLC, Boston, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8632-633X","affiliations":[{"raw_affiliation_string":"Silicon Therapeutics LLC, Boston, United States of America","institution_ids":["https://openalex.org/I4210094840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032648339","display_name":"Domenico Marson","orcid":"https://orcid.org/0000-0003-1839-9868"},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Domenico Marson","raw_affiliation_strings":["Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Trieste, Italy","Universit\u00e0 degli studi di Trieste = University of Trieste (Piazzale Europa, 1 - 34127 - Trieste - Italy)"],"raw_orcid":"https://orcid.org/0000-0003-1839-9868","affiliations":[{"raw_affiliation_string":"Molecular Biology and Nanotechnology Laboratory (MolBNL@UniTS), DEA, University of Trieste, Trieste, Italy","institution_ids":["https://openalex.org/I142444530"]},{"raw_affiliation_string":"Universit\u00e0 degli studi di Trieste = University of Trieste (Piazzale Europa, 1 - 34127 - Trieste - Italy)","institution_ids":["https://openalex.org/I142444530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086256302","display_name":"Pascal T. Merz","orcid":"https://orcid.org/0000-0002-7045-8725"},"institutions":[{"id":"https://openalex.org/I4210126810","display_name":"Scientific Consulting Group","ror":"https://ror.org/035fp5e48","country_code":"US","type":"other","lineage":["https://openalex.org/I4210126810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pascal T. Merz","raw_affiliation_strings":["PM Scientific Consulting, Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-7045-8725","affiliations":[{"raw_affiliation_string":"PM Scientific Consulting, Basel, Switzerland","institution_ids":["https://openalex.org/I4210126810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080395222","display_name":"Alexander Schlaich","orcid":"https://orcid.org/0000-0002-4250-363X"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Schlaich","raw_affiliation_strings":["Stuttgart Center for Simulation Science (SC SimTech) & Institute for Computational Physics, University of Stuttgart, Stuttgart, Germany","University of Stuttgart (Germany)"],"raw_orcid":"https://orcid.org/0000-0002-4250-363X","affiliations":[{"raw_affiliation_string":"Stuttgart Center for Simulation Science (SC SimTech) & Institute for Computational Physics, University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]},{"raw_affiliation_string":"University of Stuttgart (Germany)","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007496868","display_name":"David L. Mobley","orcid":"https://orcid.org/0000-0002-1083-5533"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]},{"id":"https://openalex.org/I4210140791","display_name":"Irvine University","ror":"https://ror.org/04ysmca02","country_code":"US","type":"education","lineage":["https://openalex.org/I4210140791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Mobley","raw_affiliation_strings":["Departments of Pharmaceutical Sciences and Chemistry, University of California Irvine, Irvine, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1083-5533","affiliations":[{"raw_affiliation_string":"Departments of Pharmaceutical Sciences and Chemistry, University of California Irvine, Irvine, California, United States of America","institution_ids":["https://openalex.org/I204250578","https://openalex.org/I4210140791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080360440","display_name":"Michael R. Shirts","orcid":"https://orcid.org/0000-0003-3249-1097"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R. Shirts","raw_affiliation_strings":["University of Colorado Boulder, Boulder, Colorado, United States of America","University of Colorado [Boulder] (Boulder, Colorado 80309 - United States)"],"raw_orcid":"https://orcid.org/0000-0003-3249-1097","affiliations":[{"raw_affiliation_string":"University of Colorado Boulder, Boulder, Colorado, United States of America","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado [Boulder] (Boulder, Colorado 80309 - United States)","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028356492","display_name":"Oliver Beckstein","orcid":"https://orcid.org/0000-0003-1340-0831"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Beckstein","raw_affiliation_strings":["Center for Biological Physics, Arizona State University, Tempe, AZ, United States of America","Department of Physics, Arizona State University, Tempe, Arizona, United States of America","ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, \u00c9tats-Unis - United States)"],"raw_orcid":"https://orcid.org/0000-0003-1340-0831","affiliations":[{"raw_affiliation_string":"Center for Biological Physics, Arizona State University, Tempe, AZ, United States of America","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Physics, Arizona State University, Tempe, Arizona, United States of America","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, \u00c9tats-Unis - United States)","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":22,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":10.3882,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.99162389,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"9","issue":"101","first_page":"6934","last_page":"6934"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9395999908447266,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.685929536819458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4976527988910675},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.34344688057899475},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07439112663269043}],"concepts":[{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.685929536819458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4976527988910675},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34344688057899475},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07439112663269043},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.21105/joss.06934","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.06934","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},{"id":"pmid:40821606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40821606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of open source software","raw_type":null},{"id":"pmh:oai:cuscholar:9306t1159","is_oa":true,"landing_page_url":"https://scholar.colorado.edu/concern/articles/9306t1159","pdf_url":"http://scholar.colorado.edu/downloads/qv33rz68d","source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:HAL:hal-04752550v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04752550","pdf_url":"https://hal.science/hal-04752550/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Open Source Software, 2024, 9 (101), pp.6934. &#x27E8;10.21105/joss.06934&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:arts.units.it:11368/3101644","is_oa":true,"landing_page_url":"https://joss.theoj.org/papers/10.21105/joss.06934","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.06934.pdf","source":{"id":"https://openalex.org/S4306400480","display_name":"ArTS Archivio della ricerca di Trieste (University of Trieste https://www.units.it/)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142444530","host_organization_name":"University of Trieste","host_organization_lineage":["https://openalex.org/I142444530"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12352497","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12352497","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12352497/pdf/nihms-2046776.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Open Source Softw","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.21105/joss.06934","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.06934","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4716253616","display_name":"CIF21 DIBBs: Middleware and High Performance Analytics Libraries for Scalable Data Science","funder_award_id":"1443054","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4725497026","display_name":null,"funder_award_id":"R35 GM148236","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5543094940","display_name":null,"funder_award_id":"EXC 2075 -390740016","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5861314668","display_name":null,"funder_award_id":"R01 GM118772","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6664189982","display_name":null,"funder_award_id":"ACI-1443054","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7222176417","display_name":null,"funder_award_id":"R01GM118772","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7249683039","display_name":null,"funder_award_id":"EXC 2075","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7481435163","display_name":null,"funder_award_id":"R35GM148236","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7655253562","display_name":null,"funder_award_id":"K08 GM139031","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8784604414","display_name":"EXC 2075: Datenintegrierte Simulationswissenschaft (SimTech)","funder_award_id":"390740016","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334747","display_name":"Singapore Institute of Manufacturing Technology","ror":"https://ror.org/00f44np30"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1625910593","https://openalex.org/W1970973025","https://openalex.org/W1989195611","https://openalex.org/W2024762727","https://openalex.org/W2050774715","https://openalex.org/W2063206968","https://openalex.org/W2064060593","https://openalex.org/W2084523245","https://openalex.org/W2118233996","https://openalex.org/W2129213941","https://openalex.org/W2140151763","https://openalex.org/W2333104569","https://openalex.org/W2342249984","https://openalex.org/W2886179519","https://openalex.org/W2950669909","https://openalex.org/W2963699952","https://openalex.org/W2990537389","https://openalex.org/W2997591727","https://openalex.org/W3002545978","https://openalex.org/W3046751266","https://openalex.org/W3047663514","https://openalex.org/W3105581675","https://openalex.org/W3111206976","https://openalex.org/W3112284847","https://openalex.org/W3201073812","https://openalex.org/W4294089543","https://openalex.org/W4313543542","https://openalex.org/W4387587248","https://openalex.org/W6675354045","https://openalex.org/W6753846778"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027"],"abstract_inverted_index":{"effectively.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
