{"id":"https://openalex.org/W4389307546","doi":"https://doi.org/10.21105/joss.05575","title":"Bidsme: expandable BIDS-ifier of brain imagery datasets","display_name":"Bidsme: expandable BIDS-ifier of brain imagery datasets","publication_year":2023,"publication_date":"2023-12-04","ids":{"openalex":"https://openalex.org/W4389307546","doi":"https://doi.org/10.21105/joss.05575"},"language":"en","primary_location":{"id":"doi:10.21105/joss.05575","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.05575","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.05575.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.05575.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081679670","display_name":"Nikita Beliy","orcid":"https://orcid.org/0009-0002-0830-3279"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nikita Beliy","raw_affiliation_strings":["- in , of , ,"],"raw_orcid":"https://orcid.org/0009-0002-0830-3279","affiliations":[{"raw_affiliation_string":"- in , of , ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063254705","display_name":"Camille Guillemin","orcid":"https://orcid.org/0000-0002-5377-7417"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Camille Guillemin","raw_affiliation_strings":["GIGA -Cyclotron Research Centre in vivo imaging , University of Liege , Liege , Belgium","- in , of , ,"],"raw_orcid":"https://orcid.org/0000-0002-5377-7417","affiliations":[{"raw_affiliation_string":"GIGA -Cyclotron Research Centre in vivo imaging , University of Liege , Liege , Belgium","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"- in , of , ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093414277","display_name":"Emeline Pommier","orcid":null},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emeline Pommier","raw_affiliation_strings":["T\u00e9l\u00e9com Physique Strasbourg , Universit\u00e9 de Strasbourg , France","- in , of , ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"T\u00e9l\u00e9com Physique Strasbourg , Universit\u00e9 de Strasbourg , France","institution_ids":["https://openalex.org/I68947357"]},{"raw_affiliation_string":"- in , of , ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014793807","display_name":"G. H. Hammad","orcid":"https://orcid.org/0000-0003-1083-3869"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gr\u00e9gory Hammad","raw_affiliation_strings":["GIGA -Cyclotron Research Centre in vivo imaging , University of Liege , Liege , Belgium","- in , of , ,"],"raw_orcid":"https://orcid.org/0000-0003-1083-3869","affiliations":[{"raw_affiliation_string":"GIGA -Cyclotron Research Centre in vivo imaging , University of Liege , Liege , Belgium","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"- in , of , ,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005472608","display_name":"Christophe Phillips","orcid":"https://orcid.org/0000-0002-4990-425X"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Christophe Phillips","raw_affiliation_strings":["GIGA -Cyclotron Research Centre in vivo imaging , University of Liege , Liege , Belgium","- in , of , ,"],"raw_orcid":"https://orcid.org/0000-0002-4990-425X","affiliations":[{"raw_affiliation_string":"GIGA -Cyclotron Research Centre in vivo imaging , University of Liege , Liege , Belgium","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"- in , of , ,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1517,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.49528587,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":94},"biblio":{"volume":"8","issue":"92","first_page":"5575","last_page":"5575"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9289000034332275,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8791746497154236},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8602393865585327},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8170425891876221},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6017341017723083},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4866988956928253},{"id":"https://openalex.org/keywords/data-file","display_name":"Data file","score":0.41910991072654724},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38946399092674255},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32685238122940063},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.31790977716445923},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3171963691711426}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8791746497154236},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8602393865585327},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8170425891876221},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6017341017723083},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4866988956928253},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.41910991072654724},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38946399092674255},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32685238122940063},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.31790977716445923},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3171963691711426}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.21105/joss.05575","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.05575","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.05575.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/309445","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/309445","pdf_url":"https://orbi.uliege.be/bitstream/2268/309445/1/10.21105.joss.05575.pdf","source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Open Source Software, 8 (92), 5575 (2023-12-04)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/335880","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/335880","pdf_url":"https://orbi.uliege.be/bitstream/2268/335880/1/beliy_bidsme_EBRAINS_2025.pdf","source":{"id":"https://openalex.org/S4306401300","display_name":"ORBi (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Software Engineering Day, Leuven, Belgium [BE], December 4, 2025","raw_type":"http://purl.org/coar/resource_type/c_8544"}],"best_oa_location":{"id":"doi:10.21105/joss.05575","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.05575","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.05575.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6497697474","display_name":null,"funder_award_id":"EOS 30446199","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G6639562732","display_name":null,"funder_award_id":"30446199","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"}],"funders":[{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"},{"id":"https://openalex.org/F4320323329","display_name":"Universit\u00e9 de Li\u00e8ge","ror":"https://ror.org/00afp2z80"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389307546.pdf","grobid_xml":"https://content.openalex.org/works/W4389307546.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W2951103577","https://openalex.org/W4206503853","https://openalex.org/W6931469081","https://openalex.org/W6950807329"],"related_works":["https://openalex.org/W2207495067","https://openalex.org/W1906486629","https://openalex.org/W3032858184","https://openalex.org/W2793346709","https://openalex.org/W2090798606","https://openalex.org/W2566091055","https://openalex.org/W1966326070","https://openalex.org/W212602161","https://openalex.org/W2368195534","https://openalex.org/W2377810582"],"abstract_inverted_index":{"The":[0],"purpose":[1],"of":[2,63,74,82],"Bidsme":[3,49,87],"is":[4,23],"to":[5,91],"organize":[6],"a":[7,119,122],"given":[8],"medical":[9],"image":[10],"dataset":[11,97],"following":[12],"the":[13,34,43,46,51,54,61,72,80,89,95],"\"Brain":[14],"Imaging":[15],"Data":[16],"Structure\"":[17],"(BIDS;":[18],"Gorgolewski":[19],"et":[20],"al.,":[21],"2016).Bidsme":[22],"an":[24],"all-in-one":[25],"organizer":[26],"tool,":[27,116],"that":[28],"not":[29,76],"only":[30],"renames":[31],"and":[32,41,66,101,114,117],"re-structures":[33],"original":[35],"data":[36,47],"files,":[37],"but":[38],"also":[39],"extracts":[40],"formats":[42],"necessary":[44],"metadata.During":[45],"organization,":[48],"provides":[50],"user":[52,90],"with":[53,121],"full":[55],"control":[56],"over":[57],"these":[58],"processes,":[59],"allowing":[60],"use":[62],"non-standard":[64],"metadata":[65,103],"file":[67],"names,":[68],"as":[69,71,111],"well":[70],"addition":[73],"modalities":[75],"yet":[77],"described":[78],"by":[79],"BIDS.Instead":[81],"strictly":[83],"imposing":[84],"this":[85],"structure,":[86],"allows":[88],"fully":[92],"configure":[93],"how":[94],"source":[96],"will":[98,104],"be":[99,105,108],"organized":[100],"what":[102],"included.Bidsme":[106],"can":[107],"used":[109],"both":[110],"Python":[112],"package":[113],"command-line":[115],"includes":[118],"tutorial":[120],"test":[123],"dataset.":[124]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2025-10-10T00:00:00"}
