{"id":"https://openalex.org/W3160777631","doi":"https://doi.org/10.21105/joss.03073","title":"mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines","display_name":"mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines","publication_year":2021,"publication_date":"2021-05-14","ids":{"openalex":"https://openalex.org/W3160777631","doi":"https://doi.org/10.21105/joss.03073","mag":"3160777631","pmid":"https://pubmed.ncbi.nlm.nih.gov/34414351"},"language":"en","primary_location":{"id":"doi:10.21105/joss.03073","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.03073","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.03073.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.03073.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058245923","display_name":"Beg\u00fcm D. Top\u00e7uo\u011flu","orcid":"https://orcid.org/0000-0003-3140-537X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Beg\u00fcm Top\u00e7uo\u011flu","raw_affiliation_strings":["Department of Microbiology & Immunology, University of Michigan","Exploratory Science Center, Merck & Co., Inc., Cambridge, Massachusetts, USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology & Immunology, University of Michigan","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Exploratory Science Center, Merck & Co., Inc., Cambridge, Massachusetts, USA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064024002","display_name":"Zena Lapp","orcid":"https://orcid.org/0000-0003-4674-2176"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zena Lapp","raw_affiliation_strings":["Department of Computational Medicine & Bioinformatics, University of Michigan"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine & Bioinformatics, University of Michigan","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060893887","display_name":"Kelly L. Sovacool","orcid":"https://orcid.org/0000-0003-3283-829X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelly Sovacool","raw_affiliation_strings":["Department of Computational Medicine & Bioinformatics, University of Michigan"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine & Bioinformatics, University of Michigan","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086283835","display_name":"Evan S. Snitkin","orcid":"https://orcid.org/0000-0001-8409-278X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evan Snitkin","raw_affiliation_strings":["Department of Internal Medicine/Division of Infectious Diseases, University of Michigan","Department of Microbiology & Immunology, University of Michigan"],"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine/Division of Infectious Diseases, University of Michigan","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Microbiology & Immunology, University of Michigan","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055037967","display_name":"Jenna Wiens","orcid":"https://orcid.org/0000-0002-1057-7722"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jenna Wiens","raw_affiliation_strings":["Department of Electrical Engineering & Computer Science, University of Michigan"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering & Computer Science, University of Michigan","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062762496","display_name":"Patrick D. Schloss","orcid":"https://orcid.org/0000-0002-6935-4275"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Schloss","raw_affiliation_strings":["Department of Microbiology & Immunology, University of Michigan"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology & Immunology, University of Michigan","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5058245923"],"corresponding_institution_ids":["https://openalex.org/I1285764155","https://openalex.org/I27837315"],"apc_list":null,"apc_paid":null,"fwci":6.2548,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.97022879,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"6","issue":"61","first_page":"3073","last_page":"3073"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7330328822135925},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.704902172088623},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.6327764987945557},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6114159822463989},{"id":"https://openalex.org/keywords/decision-tree","display_name":"Decision tree","score":0.6077457070350647},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5992778539657593},{"id":"https://openalex.org/keywords/rope","display_name":"Rope","score":0.5920443534851074},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5902301073074341},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5622426867485046},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.5601915717124939},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.5164449214935303},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5118914842605591},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5030025839805603},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4313048720359802},{"id":"https://openalex.org/keywords/data-pre-processing","display_name":"Data pre-processing","score":0.42203792929649353},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3818870484828949},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.17870208621025085},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.12542679905891418},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0998709499835968},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08536046743392944}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7330328822135925},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.704902172088623},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.6327764987945557},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6114159822463989},{"id":"https://openalex.org/C84525736","wikidata":"https://www.wikidata.org/wiki/Q831366","display_name":"Decision tree","level":2,"score":0.6077457070350647},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5992778539657593},{"id":"https://openalex.org/C162269090","wikidata":"https://www.wikidata.org/wiki/Q1156047","display_name":"Rope","level":2,"score":0.5920443534851074},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5902301073074341},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5622426867485046},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.5601915717124939},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.5164449214935303},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5118914842605591},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5030025839805603},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4313048720359802},{"id":"https://openalex.org/C10551718","wikidata":"https://www.wikidata.org/wiki/Q5227332","display_name":"Data pre-processing","level":2,"score":0.42203792929649353},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3818870484828949},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17870208621025085},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.12542679905891418},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0998709499835968},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08536046743392944},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.21105/joss.03073","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.03073","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.03073.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},{"id":"pmid:34414351","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34414351","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of open source software","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8372219","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8372219","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Open Source Softw","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.21105/joss.03073","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.03073","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.03073.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3160777631.pdf","grobid_xml":"https://content.openalex.org/works/W3160777631.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1831050183","https://openalex.org/W1896739462","https://openalex.org/W2097360283","https://openalex.org/W2101234009","https://openalex.org/W2107772748","https://openalex.org/W2110417468","https://openalex.org/W2157963336","https://openalex.org/W2582743722","https://openalex.org/W2901794234","https://openalex.org/W2911964244","https://openalex.org/W2969476445","https://openalex.org/W2969881216","https://openalex.org/W2971656115","https://openalex.org/W2994706149","https://openalex.org/W3033330873","https://openalex.org/W3039297305","https://openalex.org/W3091927171","https://openalex.org/W3102476541","https://openalex.org/W3107002689","https://openalex.org/W3138313195","https://openalex.org/W4254687493","https://openalex.org/W4294541781"],"related_works":["https://openalex.org/W2382190654","https://openalex.org/W2373129217","https://openalex.org/W1924903628","https://openalex.org/W2375717371","https://openalex.org/W424062184","https://openalex.org/W1982975944","https://openalex.org/W2372453219","https://openalex.org/W4319342639","https://openalex.org/W3173532932","https://openalex.org/W2393872772"],"abstract_inverted_index":{"Machine":[0],"learning":[1],"(ML)":[2],"for":[3],"classification":[4],"and":[5,23,34,40,77],"prediction":[6],"based":[7],"on":[8,74],"a":[9],"set":[10],"of":[11],"features":[12],"is":[13,72],"used":[14],"to":[15],"make":[16],"decisions":[17],"in":[18],"healthcare,":[19],"economics,":[20],"criminal":[21],"justice":[22],"more.":[24],"However,":[25],"implementing":[26],"an":[27,50],"ML":[28,56],"pipeline":[29],"including":[30],"preprocessing,":[31],"model":[32],"selection,":[33],"evaluation":[35],"can":[36],"be":[37],"time-consuming,":[38],"confusing,":[39],"difficult.":[41],"Here,":[42],"we":[43],"present":[44],"mikropml":[45],"(prononced":[46],"\"meek-ROPE":[47],"em":[48],"el\"),":[49],"easy-to-use":[51],"R":[52],"package":[53,71],"that":[54],"implements":[55],"pipelines":[57],"using":[58],"regression,":[59],"support":[60],"vector":[61],"machines,":[62],"decision":[63],"trees,":[64],"random":[65],"forest,":[66],"or":[67],"gradient-boosted":[68],"trees.":[69],"The":[70],"available":[73],"GitHub,":[75],"CRAN,":[76],"conda.":[78]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
