{"id":"https://openalex.org/W3097524469","doi":"https://doi.org/10.21105/joss.02670","title":"Reorient: A Web tool for reorienting and cropping MRI data.","display_name":"Reorient: A Web tool for reorienting and cropping MRI data.","publication_year":2020,"publication_date":"2020-11-01","ids":{"openalex":"https://openalex.org/W3097524469","doi":"https://doi.org/10.21105/joss.02670","mag":"3097524469"},"language":"en","primary_location":{"id":"doi:10.21105/joss.02670","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.02670","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.02670.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.02670.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090959550","display_name":"Katja Heuer","orcid":"https://orcid.org/0000-0002-7237-0196"},"institutions":[{"id":"https://openalex.org/I4210098463","display_name":"Center for Research and Interdisciplinarity","ror":"https://ror.org/00zbj9525","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210098463"]},{"id":"https://openalex.org/I4210130445","display_name":"Max Planck Institute for Human Cognitive and Brain Sciences","ror":"https://ror.org/0387jng26","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210130445"]}],"countries":["DE","FR"],"is_corresponding":false,"raw_author_name":"Katja Heuer","raw_affiliation_strings":["Center for Research and Interdisciplinarity, University of Paris","Max Planck Institute for Human Cognitive and Brain Sciences","Max Planck Institute for Human Cognitive and Brain Sciences [Leipzig]","Centre de Recherche Interdisciplinaire / Center for Research and Interdisciplinarity [Paris, France]"],"raw_orcid":"https://orcid.org/0000-0002-7237-0196","affiliations":[{"raw_affiliation_string":"Center for Research and Interdisciplinarity, University of Paris","institution_ids":["https://openalex.org/I4210098463"]},{"raw_affiliation_string":"Max Planck Institute for Human Cognitive and Brain Sciences","institution_ids":["https://openalex.org/I4210130445"]},{"raw_affiliation_string":"Max Planck Institute for Human Cognitive and Brain Sciences [Leipzig]","institution_ids":["https://openalex.org/I4210130445"]},{"raw_affiliation_string":"Centre de Recherche Interdisciplinaire / Center for Research and Interdisciplinarity [Paris, France]","institution_ids":["https://openalex.org/I4210098463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060691219","display_name":"Roberto Toro","orcid":"https://orcid.org/0000-0002-6671-858X"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I4210098463","display_name":"Center for Research and Interdisciplinarity","ror":"https://ror.org/00zbj9525","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210098463"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Roberto Toro","raw_affiliation_strings":["Center for Research and Interdisciplinarity, University of Paris","Institut Pasteur","Neuroanatomie Appliqu\u00e9e et Th\u00e9orique / Applied and Theoretical Neuroanatomy","Centre de Recherche Interdisciplinaire / Center for Research and Interdisciplinarity [Paris, France]"],"raw_orcid":"https://orcid.org/0000-0002-6671-858X","affiliations":[{"raw_affiliation_string":"Center for Research and Interdisciplinarity, University of Paris","institution_ids":["https://openalex.org/I4210098463"]},{"raw_affiliation_string":"Institut Pasteur","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"Neuroanatomie Appliqu\u00e9e et Th\u00e9orique / Applied and Theoretical Neuroanatomy","institution_ids":[]},{"raw_affiliation_string":"Centre de Recherche Interdisciplinaire / Center for Research and Interdisciplinarity [Paris, France]","institution_ids":["https://openalex.org/I4210098463"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.12769397,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"5","issue":"55","first_page":"2670","last_page":"2670"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12205","display_name":"Time Series Analysis and Forecasting","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12205","display_name":"Time Series Analysis and Forecasting","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9301000237464905,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cropping","display_name":"Cropping","score":0.6974239945411682},{"id":"https://openalex.org/keywords/neuroanatomy","display_name":"Neuroanatomy","score":0.563671886920929},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5386571288108826},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.21730831265449524},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.17365491390228271},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.1423330008983612},{"id":"https://openalex.org/keywords/agriculture","display_name":"Agriculture","score":0.053861409425735474},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.04483705759048462}],"concepts":[{"id":"https://openalex.org/C13558536","wikidata":"https://www.wikidata.org/wiki/Q785116","display_name":"Cropping","level":3,"score":0.6974239945411682},{"id":"https://openalex.org/C103378370","wikidata":"https://www.wikidata.org/wiki/Q948647","display_name":"Neuroanatomy","level":2,"score":0.563671886920929},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5386571288108826},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.21730831265449524},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.17365491390228271},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.1423330008983612},{"id":"https://openalex.org/C118518473","wikidata":"https://www.wikidata.org/wiki/Q11451","display_name":"Agriculture","level":2,"score":0.053861409425735474},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.04483705759048462}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.21105/joss.02670","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.02670","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.02670.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},{"id":"pmh:oai:zenodo.org:3780150","is_oa":true,"landing_page_url":"https://zenodo.org/record/3780150","pdf_url":"https://zenodo.org/record/3780150","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:HAL:hal-03745180v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03745180","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Open Source Software, 2020, 5 (55), pp.2670. &#x27E8;10.21105/joss.02670&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.5281/zenodo.3780150","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3780150","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Image"}],"best_oa_location":{"id":"doi:10.21105/joss.02670","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.02670","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.02670.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3097524469.pdf","grobid_xml":"https://content.openalex.org/works/W3097524469.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2937417973","https://openalex.org/W3007808423","https://openalex.org/W4393601435"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W4235631914","https://openalex.org/W97694169","https://openalex.org/W3016130157","https://openalex.org/W3212461180","https://openalex.org/W2390279801","https://openalex.org/W3198224272","https://openalex.org/W2358668433","https://openalex.org/W4248648960"],"abstract_inverted_index":{"Having":[0],"a":[1,7,53,63],"properly":[2],"oriented":[3,41],"MRI":[4,29],"dataset":[5],"is":[6,16],"fundamental":[8],"step":[9],"in":[10,62],"any":[11],"neuroimaging":[12],"workflow.":[13,65],"Reorient":[14],"(https://neuroanatomy.github.io/reorient)":[15],"an":[17,33],"open":[18],"source":[19],"Web":[20],"application":[21],"for":[22,38],"the":[23,50,69,71,75],"manual":[24,60],"alignment":[25,61],"and":[26,47,55,74],"cropping":[27],"of":[28],"nifti":[30],"volumes":[31],"using":[32],"intuitive":[34],"graphic":[35],"interface.":[36],"Even":[37],"completely":[39],"arbitrarily":[40],"brains,":[42],"with":[43],"different":[44],"data":[45],"encodings":[46],"anisotropic":[48],"voxels,":[49],"tool":[51],"provides":[52],"fast":[54],"precise":[56],"method":[57],"to":[58],"include":[59],"reproducible":[64],"This":[66],"figure":[67],"shows":[68],"interface,":[70],"reorientation":[72],"process,":[73],"final":[76],"result.":[77]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
