{"id":"https://openalex.org/W2953765210","doi":"https://doi.org/10.21105/joss.01344","title":"GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files","display_name":"GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files","publication_year":2019,"publication_date":"2019-07-07","ids":{"openalex":"https://openalex.org/W2953765210","doi":"https://doi.org/10.21105/joss.01344","mag":"2953765210"},"language":"en","primary_location":{"id":"doi:10.21105/joss.01344","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.01344","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.01344.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.01344.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5098610329","display_name":"Erik Wik","orcid":null},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Erik Wik","raw_affiliation_strings":["Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005719382","display_name":"Hampus Olin","orcid":null},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Hampus Olin","raw_affiliation_strings":["Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010202103","display_name":"Caitlin Vigetun Haughey","orcid":null},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Caitlin Haughey","raw_affiliation_strings":["Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068589534","display_name":"Lisa Klasson","orcid":"https://orcid.org/0000-0002-5874-7153"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Lisa Klasson","raw_affiliation_strings":["Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011629303","display_name":"Jacques Dainat","orcid":"https://orcid.org/0000-0002-6629-0173"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I4210110862","display_name":"Department of Medical Sciences","ror":"https://ror.org/019zcmj26","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862"]}],"countries":["RU","SE"],"is_corresponding":false,"raw_author_name":"Jacques Dainat","raw_affiliation_strings":["IMBIM -Department of Medical Biochemistry and Microbiology, Box 582, S-751 23 Uppsala, SWEDEN","National Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab, Uppsala Biomedicinska Centrum (BMC), Husargatan 3, S-751 23 Uppsala, SWEDEN"],"raw_orcid":"https://orcid.org/0000-0002-6629-0173","affiliations":[{"raw_affiliation_string":"IMBIM -Department of Medical Biochemistry and Microbiology, Box 582, S-751 23 Uppsala, SWEDEN","institution_ids":["https://openalex.org/I4210110862"]},{"raw_affiliation_string":"National Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab, Uppsala Biomedicinska Centrum (BMC), Husargatan 3, S-751 23 Uppsala, SWEDEN","institution_ids":["https://openalex.org/I2800139495"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.05289439,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"4","issue":"39","first_page":"1344","last_page":"1344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6336595416069031},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5869966745376587},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5323038101196289},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2609769105911255},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16871097683906555},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1387295424938202},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.058659136295318604},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.057907938957214355}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6336595416069031},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5869966745376587},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5323038101196289},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2609769105911255},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16871097683906555},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1387295424938202},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.058659136295318604},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.057907938957214355},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.01344","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.01344","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.01344.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.01344","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.01344","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.01344.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953765210.pdf","grobid_xml":"https://content.openalex.org/works/W2953765210.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W2126419817","https://openalex.org/W2137586531","https://openalex.org/W2170551349","https://openalex.org/W2592811885"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}