{"id":"https://openalex.org/W2782696366","doi":"https://doi.org/10.21105/joss.00464","title":"chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data","display_name":"chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data","publication_year":2018,"publication_date":"2018-01-16","ids":{"openalex":"https://openalex.org/W2782696366","doi":"https://doi.org/10.21105/joss.00464","mag":"2782696366"},"language":"en","primary_location":{"id":"doi:10.21105/joss.00464","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.00464","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.21105/joss.00464","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004411749","display_name":"Markus J. Ankenbrand","orcid":"https://orcid.org/0000-0002-6620-807X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Markus J Ankenbrand","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008530681","display_name":"Simon Pfaff","orcid":"https://orcid.org/0000-0001-8505-9439"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simon Pfaff","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063086335","display_name":"Niklas Terhoeven","orcid":"https://orcid.org/0000-0002-8669-0000"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Niklas Terhoeven","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054488431","display_name":"Musga Qureischi","orcid":"https://orcid.org/0000-0001-9661-8494"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Musga Qureischi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027396617","display_name":"Maik G\u00fcndel","orcid":"https://orcid.org/0000-0002-0502-4576"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maik G\u00fcndel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085050651","display_name":"Clemens L. Wei\u00df","orcid":"https://orcid.org/0000-0003-3321-3902"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Clemens L. Wei\u00df","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086184788","display_name":"Thomas Hackl","orcid":"https://orcid.org/0000-0002-0022-320X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas Hackl","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5054737574","display_name":"Frank F\u00f6rster","orcid":"https://orcid.org/0000-0003-4166-5423"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frank F\u00f6rster","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5004411749"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6674,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.83996298,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"3","issue":"21","first_page":"464","last_page":"464"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.9082899689674377},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7983572483062744},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.7397522926330566},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6465656757354736},{"id":"https://openalex.org/keywords/chloroplast","display_name":"Chloroplast","score":0.6161816716194153},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5192759037017822},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5189771056175232},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33112144470214844},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2480863332748413},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.05468609929084778}],"concepts":[{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.9082899689674377},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7983572483062744},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.7397522926330566},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6465656757354736},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.6161816716194153},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5192759037017822},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5189771056175232},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33112144470214844},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2480863332748413},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.05468609929084778},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.21105/joss.00464","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.00464","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Open Source Software","raw_type":"journal-article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/376785","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/376785","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software, 3 (21)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000376785","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000376785","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.21105/joss.00464","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.00464","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320325356","display_name":"Julius-Maximilians-Universit\u00e4t W\u00fcrzburg","ror":"https://ror.org/00fbnyb24"},{"id":"https://openalex.org/F4320336988","display_name":"Graduate School of Life Sciences, Julius-Maximilians-Universit\u00e4t W\u00fcrzburg","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2096128575","https://openalex.org/W2102619694","https://openalex.org/W2108234281","https://openalex.org/W2116041602","https://openalex.org/W2129156298","https://openalex.org/W2140450495","https://openalex.org/W2142678478","https://openalex.org/W2147096538","https://openalex.org/W2170551349","https://openalex.org/W2224150270","https://openalex.org/W2311491794","https://openalex.org/W2340138237","https://openalex.org/W2519934224","https://openalex.org/W2558456873"],"related_works":["https://openalex.org/W4210312276","https://openalex.org/W2417514914","https://openalex.org/W1641084016","https://openalex.org/W2018832993","https://openalex.org/W4255415692","https://openalex.org/W2994945316","https://openalex.org/W3128701120","https://openalex.org/W4253705341","https://openalex.org/W2132414125","https://openalex.org/W1841715584"],"abstract_inverted_index":{"Ankenbrand":[0],"et":[1],"al.,":[2],"(2018).":[3],"chloroExtractor:":[4],"extraction":[5],"and":[6],"assembly":[7],"of":[8,18],"the":[9],"chloroplast":[10],"genome":[11,14],"from":[12],"whole":[13],"shotgun":[15],"data.":[16],"Journal":[17],"Open":[19],"Source":[20],"Software,":[21],"3(21),":[22],"464,":[23],"https://doi.org/10.21105/joss.00464":[24]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":7}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
