{"id":"https://openalex.org/W3089299485","doi":"https://doi.org/10.18725/oparu-32473","title":"Modeling regulatory processes with qualitative networks","display_name":"Modeling regulatory processes with qualitative networks","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W3089299485","doi":"https://doi.org/10.18725/oparu-32473","mag":"3089299485"},"language":"en","primary_location":{"id":"pmh:oai:oparu.uni-ulm.de:123456789/32535","is_oa":true,"landing_page_url":"http://doi.org/10.18725/OPARU-32473","pdf_url":"http://nbn-resolving.de/urn:nbn:de:bsz:289-oparu-32535-0","source":{"id":"https://openalex.org/S4306400353","display_name":"OPen Access Repositorium der Universit\u00e4t Ulm (OPARU) (Ulm University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I196349391","host_organization_name":"Universit\u00e4t Ulm","host_organization_lineage":["https://openalex.org/I196349391"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"type":"dissertation","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://nbn-resolving.de/urn:nbn:de:bsz:289-oparu-32535-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000170757","display_name":"Julian Schwab","orcid":"https://orcid.org/0000-0002-3050-0618"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Schwab, Julian","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5000170757"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13051","display_name":"Qualitative Comparative Analysis Research","score":0.8011999726295471,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13051","display_name":"Qualitative Comparative Analysis Research","score":0.8011999726295471,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44083595275878906},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4321780800819397},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25589677691459656}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44083595275878906},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4321780800819397},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25589677691459656}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:oparu.uni-ulm.de:123456789/32535","is_oa":true,"landing_page_url":"http://doi.org/10.18725/OPARU-32473","pdf_url":"http://nbn-resolving.de/urn:nbn:de:bsz:289-oparu-32535-0","source":{"id":"https://openalex.org/S4306400353","display_name":"OPen Access Repositorium der Universit\u00e4t Ulm (OPARU) (Ulm University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I196349391","host_organization_name":"Universit\u00e4t Ulm","host_organization_lineage":["https://openalex.org/I196349391"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},{"id":"doi:10.18725/oparu-32473","is_oa":true,"landing_page_url":"https://doi.org/10.18725/oparu-32473","pdf_url":null,"source":{"id":"https://openalex.org/S7407052964","display_name":"Universit\u00e4t Ulm, Kommunikations- und Informationszentrum (kiz)","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"thesis"},{"id":"mag:3089299485","is_oa":false,"landing_page_url":"https://oparu.uni-ulm.de/xmlui/handle/123456789/32535","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:oparu.uni-ulm.de:123456789/32535","is_oa":true,"landing_page_url":"http://doi.org/10.18725/OPARU-32473","pdf_url":"http://nbn-resolving.de/urn:nbn:de:bsz:289-oparu-32535-0","source":{"id":"https://openalex.org/S4306400353","display_name":"OPen Access Repositorium der Universit\u00e4t Ulm (OPARU) (Ulm University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I196349391","host_organization_name":"Universit\u00e4t Ulm","host_organization_lineage":["https://openalex.org/I196349391"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3089299485.pdf","grobid_xml":"https://content.openalex.org/works/W3089299485.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1930959991","https://openalex.org/W1542035905","https://openalex.org/W147551493","https://openalex.org/W2387615228","https://openalex.org/W2155789885","https://openalex.org/W2625353905","https://openalex.org/W2001548272","https://openalex.org/W2804545786","https://openalex.org/W2167437179","https://openalex.org/W1594751800","https://openalex.org/W141092170","https://openalex.org/W2625102195","https://openalex.org/W1971144865","https://openalex.org/W2901833810","https://openalex.org/W2802063128","https://openalex.org/W2263346001","https://openalex.org/W51833465","https://openalex.org/W1993418188","https://openalex.org/W2060393046","https://openalex.org/W190179165"],"abstract_inverted_index":{"In":[0,252],"systems":[1],"biology,":[2],"dynamic":[3,25],"computer":[4],"models":[5,26,31],"are":[6,20,32,38,60,64,151],"used":[7,39,165],"to":[8,42,84,111,135,166,229],"simulate":[9,169],"the":[10,44,55,126,137,146,174,194,222,225,230,255,263,281,302],"changing":[11,256],"behavior":[12,46],"of":[13,24,47,57,65,76,101,125,173,193,224,239,250,258,265,284,289,307,321],"a":[14,48,89,122,154,170,191,259,317],"system":[15,49,261],"over":[16,50],"time.":[17,51],"Boolean":[18,58,77,102,157,201,273,285,290],"networks":[19,59,78,103,202,274,291,323],"one":[21],"popular":[22],"class":[23],"for":[27,68,96,142,156,187],"regulatory":[28,196],"processes.":[29],"These":[30,149],"based":[33],"on":[34,145,295,311],"propositional":[35],"logic.":[36],"They":[37],"as":[40,70],"tools":[41],"predict":[43],"qualitative":[45],"Stable":[52],"states":[53],"in":[54,88,121,177,190,214,272],"dynamics":[56,129],"called":[61,160,299],"attractors.":[62],"Attractors":[63],"particular":[66],"interest":[67],"researchers":[69],"they":[71],"represent":[72],"biological":[73,240,260],"phenotypes.":[74],"Simulation":[75],"under":[79,104],"perturbed":[80,107],"conditions":[81],"can":[82,203],"help":[83],"identify":[85],"drugable":[86],"targets":[87],"system.":[90],"This":[91,132,162],"work":[92,216],"comprises":[93],"different":[94],"methods":[95,150],"model-":[97],"ing":[98],"and":[99,106,116,168,220,292],"simulation":[100,138,310],"normal":[105],"conditions.":[108],"An":[109,287],"algorithm":[110,133,183],"automatically":[112],"detect":[113],"meaningful":[114],"perturbations":[115],"perturbation":[117],"combinations":[118],"which":[119,242,279],"result":[120],"user-specified":[123],"change":[124],"underlying":[127],"network\u2019s":[128],"was":[130,164,184,267],"developed.":[131],"aims":[134],"reduce":[136],"effort":[139],"when":[140],"searching":[141],"specific":[143],"effects":[144],"system\u2019s":[147],"behavior.":[148],"integrated":[152],"into":[153],"framework":[155,163],"network":[158],"modeling,":[159],"ViSiBooL.":[161],"create":[167],"literature-based":[171],"model":[172,192],"Wnt/IGF":[175],"crosstalk":[176],"hematopoietic":[178],"stem-cells.":[179],"The":[180,209,309],"automated":[181],"screening":[182],"successfully":[185],"applied":[186],"target":[188],"identification":[189],"senescence-associated":[195],"phenotype":[197],"after":[198],"DNA":[199],"damage.":[200],"be":[204],"reconstructed":[205],"from":[206],"time-series":[207],"data.":[208],"new":[210],"reconstruc-":[211],"tion":[212],"pipeline":[213],"this":[215,253],"reduces":[217],"computation":[218],"time":[219],"increases":[221],"sensitivity":[223],"predicted":[226],"regulations":[227],"compared":[228,231],"base":[232],"algorithm.":[233],"Robustness":[234],"is":[235,275],"an":[236,276],"essential":[237],"property":[238],"systems,":[241],"makes":[243],"it":[244],"sustain-":[245],"able":[246],"against":[247],"various":[248],"kinds":[249],"stress.":[251],"work,":[254],"robustness":[257],"during":[262],"process":[264],"aging":[266],"analyzed.":[268],"Exhaustive":[269],"attractor":[270,293,303],"search":[271,294,304],"NP-hard":[277],"problem":[278],"limits":[280],"manageable":[282],"size":[283],"networks.":[286],"implementation":[288],"programmable":[296],"hardware":[297,314],"chips,":[298],"FPGAs,":[300],"accelerates":[301],"by":[305],"orders":[306],"magnitude.":[308],"these":[312],"specialized":[313],"chips":[315],"enables":[316],"more":[318],"detailed":[319],"analysis":[320],"larger":[322],"than":[324],"with":[325],"software-based":[326],"approaches.":[327]},"counts_by_year":[],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2020-10-01T00:00:00"}
