{"id":"https://openalex.org/W4416035786","doi":"https://doi.org/10.18653/v1/2025.emnlp-main.1211","title":"Rethinking Text-based Protein Understanding: Retrieval or LLM?","display_name":"Rethinking Text-based Protein Understanding: Retrieval or LLM?","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4416035786","doi":"https://doi.org/10.18653/v1/2025.emnlp-main.1211"},"language":null,"primary_location":{"id":"doi:10.18653/v1/2025.emnlp-main.1211","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2025.emnlp-main.1211","pdf_url":"https://aclanthology.org/2025.emnlp-main.1211.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://aclanthology.org/2025.emnlp-main.1211.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100833839","display_name":"Junhui Wu","orcid":"https://orcid.org/0009-0006-5981-3550"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Juntong Wu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101887097","display_name":"Zijing Liu","orcid":"https://orcid.org/0000-0002-0189-7409"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zijing Liu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087269962","display_name":"He Cao","orcid":"https://orcid.org/0009-0000-2282-966X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"He Cao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100348564","display_name":"Hao Li","orcid":"https://orcid.org/0000-0002-2125-9092"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li Hao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100566247","display_name":"Bin Feng","orcid":"https://orcid.org/0009-0003-8681-8558"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bin Feng","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Zishan Shu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zishan Shu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055766208","display_name":"Ke Yu","orcid":"https://orcid.org/0009-0006-9687-6171"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ke Yu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100604316","display_name":"Yuan Li","orcid":"https://orcid.org/0000-0002-0482-4213"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li Yuan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100345915","display_name":"Yu Li","orcid":"https://orcid.org/0000-0003-1865-8276"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu Li","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5100833839"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28499395,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"23737","last_page":"23757"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.25440001487731934},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.2538999915122986},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.25380000472068787},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.24250000715255737},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.23739999532699585}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4674000144004822},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33239999413490295},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.25440001487731934},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.2538999915122986},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.25380000472068787},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.24250000715255737},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.23739999532699585},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.22859999537467957},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.22630000114440918},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.22439999878406525}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/2025.emnlp-main.1211","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2025.emnlp-main.1211","pdf_url":"https://aclanthology.org/2025.emnlp-main.1211.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/2025.emnlp-main.1211","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2025.emnlp-main.1211","pdf_url":"https://aclanthology.org/2025.emnlp-main.1211.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416035786.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-11-08T00:00:00"}
