{"id":"https://openalex.org/W2971173350","doi":"https://doi.org/10.18653/v1/w19-5010","title":"Deep Contextualized Biomedical Abbreviation Expansion","display_name":"Deep Contextualized Biomedical Abbreviation Expansion","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2971173350","doi":"https://doi.org/10.18653/v1/w19-5010","mag":"2971173350"},"language":"en","primary_location":{"id":"doi:10.18653/v1/w19-5010","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w19-5010","pdf_url":"https://www.aclweb.org/anthology/W19-5010.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th BioNLP Workshop and Shared Task","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/W19-5010.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100611571","display_name":"Qiao Jin","orcid":"https://orcid.org/0000-0002-1268-7239"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qiao Jin","raw_affiliation_strings":["University of Pittsburgh"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jinling Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinling Liu","raw_affiliation_strings":["University of Pittsburgh"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046515259","display_name":"Xinghua Lu","orcid":"https://orcid.org/0000-0002-8599-2269"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinghua Lu","raw_affiliation_strings":["University of Pittsburgh"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100611571"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":null,"apc_paid":null,"fwci":1.0307,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.76310081,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"88","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8736096620559692},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.662331223487854},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.650484561920166},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6471911668777466},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5900261998176575},{"id":"https://openalex.org/keywords/macro","display_name":"Macro","score":0.5629003047943115},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4925735592842102},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4822183847427368},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4816095530986786},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.48061126470565796}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8736096620559692},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.662331223487854},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.650484561920166},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6471911668777466},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5900261998176575},{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.5629003047943115},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4925735592842102},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4822183847427368},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4816095530986786},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.48061126470565796},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/w19-5010","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w19-5010","pdf_url":"https://www.aclweb.org/anthology/W19-5010.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th BioNLP Workshop and Shared Task","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/w19-5010","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w19-5010","pdf_url":"https://www.aclweb.org/anthology/W19-5010.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th BioNLP Workshop and Shared Task","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2971173350.pdf","grobid_xml":"https://content.openalex.org/works/W2971173350.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W85269015","https://openalex.org/W192539577","https://openalex.org/W1522301498","https://openalex.org/W2028102159","https://openalex.org/W2053154970","https://openalex.org/W2162234949","https://openalex.org/W2163303745","https://openalex.org/W2250962271","https://openalex.org/W2251529656","https://openalex.org/W2259709654","https://openalex.org/W2517456239","https://openalex.org/W2518202280","https://openalex.org/W2527896214","https://openalex.org/W2582146834","https://openalex.org/W2740782137","https://openalex.org/W2757205734","https://openalex.org/W2771560733","https://openalex.org/W2896457183","https://openalex.org/W2917277095","https://openalex.org/W2930411456","https://openalex.org/W2962739339","https://openalex.org/W2963341956","https://openalex.org/W2963587816","https://openalex.org/W2964121744","https://openalex.org/W2964242047"],"related_works":["https://openalex.org/W2030816003","https://openalex.org/W2384605597","https://openalex.org/W4239992647","https://openalex.org/W2150013480","https://openalex.org/W1554458299","https://openalex.org/W81423522","https://openalex.org/W4288267738","https://openalex.org/W2964413124","https://openalex.org/W4388937922","https://openalex.org/W3113264705"],"abstract_inverted_index":{"Automatic":[0],"identification":[1],"and":[2,19,39,73,90,96],"expansion":[3],"of":[4,71,75],"ambiguous":[5,46],"abbreviations":[6,47],"are":[7],"essential":[8],"for":[9,44,85],"biomedical":[10],"natural":[11],"language":[12],"processing":[13],"applications,":[14],"such":[15],"as":[16],"information":[17],"retrieval":[18],"question":[20],"answering":[21],"systems.":[22],"In":[23],"this":[24],"paper,":[25],"we":[26],"present":[27],"DEep":[28],"Contextualized":[29],"Biomedical":[30],"Abbreviation":[31],"Expansion":[32],"(DECBAE)":[33],"model.":[34],"DECBAE":[35,60],"automatically":[36],"collects":[37],"substantial":[38],"relatively":[40],"clean":[41],"annotated":[42],"contexts":[43],"950":[45],"from":[48],"PubMed":[49],"abstracts":[50],"using":[51],"a":[52,87],"simple":[53],"heuristic.":[54],"Then":[55],"it":[56],"utilizes":[57],"BioELMo":[58],"Our":[59],"model":[61,100],"outperforms":[62],"other":[63],"baselines":[64],"by":[65],"large":[66],"margins,":[67],"achieving":[68],"average":[69],"accuracy":[70],"0.961":[72],"macro-F1":[74],"0.917":[76],"on":[77],"the":[78],"dataset.":[79],"It":[80],"also":[81],"surpasses":[82],"human":[83],"performance":[84],"expanding":[86],"sample":[88],"abbreviation,":[89],"remains":[91],"robust":[92],"in":[93],"imbalanced,":[94],"low-resources":[95],"clinical":[97],"settings.":[98],"Language":[99],"pre-training":[101]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
