{"id":"https://openalex.org/W2508127603","doi":"https://doi.org/10.18653/v1/w16-2925","title":"Building a dictionary of lexical variants for phenotype descriptors","display_name":"Building a dictionary of lexical variants for phenotype descriptors","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2508127603","doi":"https://doi.org/10.18653/v1/w16-2925","mag":"2508127603"},"language":"en","primary_location":{"id":"doi:10.18653/v1/w16-2925","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2925","pdf_url":"https://www.aclweb.org/anthology/W16-2925.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/W16-2925.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089727775","display_name":"Simon Kocbek","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Simon Kocbek","raw_affiliation_strings":["Department of Computing and Information Systems, University of Melbourne, Melbourne, VIC 3000, Australia","Kinghorn Center for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2011, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Computing and Information Systems, University of Melbourne, Melbourne, VIC 3000, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Kinghorn Center for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2011, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011041769","display_name":"Tudor Groza","orcid":"https://orcid.org/0000-0003-2267-8333"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tudor Groza","raw_affiliation_strings":["Kinghorn Center for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2011, Australia"],"affiliations":[{"raw_affiliation_string":"Kinghorn Center for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2011, Australia","institution_ids":["https://openalex.org/I136750679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089727775"],"corresponding_institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165779595"],"apc_list":null,"apc_paid":null,"fwci":0.6669,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.73391995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"186","last_page":"190"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7955896854400635},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6686402559280396},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6489101648330688},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5892561674118042},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5796074867248535},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5649389624595642},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.4431600570678711},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.42770272493362427},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.17961978912353516},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10298565030097961}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7955896854400635},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6686402559280396},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6489101648330688},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5892561674118042},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5796074867248535},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5649389624595642},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.4431600570678711},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.42770272493362427},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.17961978912353516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10298565030097961},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/w16-2925","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2925","pdf_url":"https://www.aclweb.org/anthology/W16-2925.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/w16-2925","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2925","pdf_url":"https://www.aclweb.org/anthology/W16-2925.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2508127603.pdf","grobid_xml":"https://content.openalex.org/works/W2508127603.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1544291342","https://openalex.org/W1601038846","https://openalex.org/W2002507929","https://openalex.org/W2036841261","https://openalex.org/W2048024098","https://openalex.org/W2110362051","https://openalex.org/W2111299816","https://openalex.org/W2113072832","https://openalex.org/W2119613819","https://openalex.org/W2129113459","https://openalex.org/W2137724373","https://openalex.org/W2163670493","https://openalex.org/W2168041406","https://openalex.org/W2170282111","https://openalex.org/W2270018644","https://openalex.org/W4229692965","https://openalex.org/W4400177176"],"related_works":["https://openalex.org/W2032233321","https://openalex.org/W3121970507","https://openalex.org/W2110028391","https://openalex.org/W54497855","https://openalex.org/W217960748","https://openalex.org/W3125814499","https://openalex.org/W2090827041","https://openalex.org/W2094012830","https://openalex.org/W187246281","https://openalex.org/W2079194830"],"abstract_inverted_index":{"Detecting":[0],"phenotype":[1,66],"descriptors":[2],"in":[3,65],"text":[4],"and":[5],"linking":[6],"them":[7],"to":[8,62],"ontology":[9],"concepts":[10],"is":[11,49],"a":[12,37,50,56,60],"challenging":[13],"task.":[14],"Current":[15],"state-of-the":[16],"art":[17],"concept":[18,67],"recognizers":[19],"struggle":[20],"with":[21,59],"several":[22],"issues":[23],"due":[24],"the":[25,43],"variety":[26],"of":[27,35,39,55],"human":[28],"expressiveness.":[29],"Here":[30],"we":[31],"present":[32],"initial":[33],"results":[34],"creating":[36],"dictionary":[38],"lexical":[40],"variants":[41],"for":[42],"Human":[44],"Phenotype":[45],"Ontology.":[46],"This":[47],"work":[48],"smaller":[51],"but":[52],"important":[53],"part":[54],"larger":[57],"project":[58],"goal":[61],"improve":[63],"recall":[64],"recognizers.":[68]},"counts_by_year":[{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
