{"id":"https://openalex.org/W2463186317","doi":"https://doi.org/10.18653/v1/w16-2920","title":"This before That: Causal Precedence in the Biomedical Domain","display_name":"This before That: Causal Precedence in the Biomedical Domain","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2463186317","doi":"https://doi.org/10.18653/v1/w16-2920","mag":"2463186317"},"language":"en","primary_location":{"id":"doi:10.18653/v1/w16-2920","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2920","pdf_url":"https://www.aclweb.org/anthology/W16-2920.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/W16-2920.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030626360","display_name":"Gus Hahn-Powell","orcid":"https://orcid.org/0000-0002-7957-3586"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gus Hahn-Powell","raw_affiliation_strings":["University of Arizona Tucson, AZ 85721, USA","University of Arizona, Tucson, United States"],"affiliations":[{"raw_affiliation_string":"University of Arizona Tucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, Tucson, United States","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023662337","display_name":"Dane Bell","orcid":"https://orcid.org/0000-0002-7462-0208"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dane Bell","raw_affiliation_strings":["University of Arizona Tucson, AZ 85721, USA","University of Arizona, Tucson, United States"],"affiliations":[{"raw_affiliation_string":"University of Arizona Tucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, Tucson, United States","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066447249","display_name":"Marco A. Valenzuela-Esc\u00e1rcega","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco A. Valenzuela-Esc\u00e1rcega","raw_affiliation_strings":["University of Arizona, Tucson, United States"],"affiliations":[{"raw_affiliation_string":"University of Arizona, Tucson, United States","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047699502","display_name":"Mihai Surdeanu","orcid":"https://orcid.org/0000-0001-6956-8030"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mihai Surdeanu","raw_affiliation_strings":["University of Arizona Tucson, AZ 85721, USA","University of Arizona, Tucson, United States"],"affiliations":[{"raw_affiliation_string":"University of Arizona Tucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, Tucson, United States","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030626360"],"corresponding_institution_ids":["https://openalex.org/I138006243"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.03736794,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"146","last_page":"155"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7468374371528625},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6733053922653198},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6409363746643066},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6057584881782532},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5970844030380249},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5927391052246094},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.48915961384773254},{"id":"https://openalex.org/keywords/causal-inference","display_name":"Causal inference","score":0.48689618706703186},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4229794144630432},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12590229511260986},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10466340184211731},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.06206482648849487}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7468374371528625},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6733053922653198},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6409363746643066},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6057584881782532},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5970844030380249},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5927391052246094},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.48915961384773254},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.48689618706703186},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4229794144630432},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12590229511260986},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10466340184211731},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.06206482648849487},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.18653/v1/w16-2920","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2920","pdf_url":"https://www.aclweb.org/anthology/W16-2920.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1606.08089","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1606.08089","pdf_url":"https://arxiv.org/pdf/1606.08089","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:2463186317","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1606.08089.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1606.08089","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1606.08089","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.18653/v1/w16-2920","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2920","pdf_url":"https://www.aclweb.org/anthology/W16-2920.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3048660544","display_name":null,"funder_award_id":"W911NF-14-1-","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"},{"id":"https://openalex.org/G3424441068","display_name":null,"funder_award_id":"W911NF-14-1","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G5111240050","display_name":null,"funder_award_id":"W911NF-14-1-0395","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G5524522455","display_name":null,"funder_award_id":"DARPA","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G7452299184","display_name":null,"funder_award_id":"W911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G8998121839","display_name":null,"funder_award_id":"911NF","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"}],"funders":[{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320332815","display_name":"Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2463186317.pdf","grobid_xml":"https://content.openalex.org/works/W2463186317.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W168564468","https://openalex.org/W193401168","https://openalex.org/W2025297205","https://openalex.org/W2032566933","https://openalex.org/W2064675550","https://openalex.org/W2152228269","https://openalex.org/W2153635508","https://openalex.org/W2164777277","https://openalex.org/W2185599447","https://openalex.org/W2189472871","https://openalex.org/W2251220668","https://openalex.org/W2251392452","https://openalex.org/W2273647512","https://openalex.org/W2468432491","https://openalex.org/W2916355958","https://openalex.org/W2949291266","https://openalex.org/W2950577311"],"related_works":["https://openalex.org/W2963063408","https://openalex.org/W2189750311","https://openalex.org/W2735972461","https://openalex.org/W2951104482","https://openalex.org/W2400194187","https://openalex.org/W2250751443","https://openalex.org/W2884962623","https://openalex.org/W2890487450","https://openalex.org/W1578134982","https://openalex.org/W166721801","https://openalex.org/W2169218904","https://openalex.org/W2465041517","https://openalex.org/W851150358","https://openalex.org/W3156393901","https://openalex.org/W2984134369","https://openalex.org/W2250864761","https://openalex.org/W188860745","https://openalex.org/W2039814707","https://openalex.org/W3098965860","https://openalex.org/W3168861085"],"abstract_inverted_index":{"Causal":[0],"precedence":[1,37,58,102],"between":[2],"biochemical":[3],"interactions":[4],"is":[5,117],"crucial":[6],"in":[7,38,59],"the":[8,23,39,60,95,99,111],"biomedical":[9,40,61],"domain,":[10],"because":[11],"it":[12],"transforms":[13],"collections":[14],"of":[15,56,72,74,91,132,139],"individual":[16,85],"interactions,":[17],"e.g.,":[18],"bindings":[19],"and":[20,31,79,105],"phosphorylations,":[21],"into":[22],"causal":[24,36,57],"mechanisms":[25],"needed":[26],"to":[27,68,119,127],"inform":[28],"meaningful":[29],"search":[30],"inference.":[32],"Here,":[33],"we":[34,49,64],"analyze":[35],"domain":[41],"as":[42],"distinct":[43],"from":[44],"open-domain,":[45],"temporal":[46],"precedence.":[47],"First,":[48],"describe":[50],"a":[51,70,88,124,135],"novel,":[52],"hand-annotated":[53],"text":[54],"corpus":[55,67],"domain.":[62],"Second,":[63],"use":[65],"this":[66,130],"investigate":[69],"battery":[71],"models":[73,108],"precedence,":[75],"covering":[76],"rule-based,":[77],"feature-based,":[78],"latent":[80,106],"representation":[81,107],"models.":[82],"The":[83],"highestperforming":[84],"model":[86],"achieved":[87],"micro":[89,136],"F1":[90,137],"43":[92],"points,":[93],"approaching":[94],"best":[96],"performers":[97],"on":[98,129],"simpler":[100],"temporalonly":[101],"tasks.":[103],"Feature-based":[104],"each":[109],"outperform":[110],"rule-based":[112],"models,":[113],"but":[114],"their":[115],"performance":[116],"complementary":[118],"one":[120],"another.":[121],"We":[122],"apply":[123],"sieve-based":[125],"architecture":[126],"capitalize":[128],"lack":[131],"overlap,":[133],"achieving":[134],"score":[138],"46":[140],"points.":[141]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
