{"id":"https://openalex.org/W2508265673","doi":"https://doi.org/10.18653/v1/w16-2904","title":"Graph-based Semi-supervised Gene Mention Tagging","display_name":"Graph-based Semi-supervised Gene Mention Tagging","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2508265673","doi":"https://doi.org/10.18653/v1/w16-2904","mag":"2508265673"},"language":"en","primary_location":{"id":"doi:10.18653/v1/w16-2904","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2904","pdf_url":"https://www.aclweb.org/anthology/W16-2904.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/W16-2904.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031099600","display_name":"Golnar Sheikhshab","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210133112"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Golnar Sheikhshab","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada","School of Computing Science, Simon Fraser University, Burnaby, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052364640","display_name":"Elizabeth Starks","orcid":"https://orcid.org/0000-0003-0323-1392"},"institutions":[{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Elizabeth Starks","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210133112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083812935","display_name":"Aly Karsan","orcid":"https://orcid.org/0000-0001-6753-892X"},"institutions":[{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Aly Karsan","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210133112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081354508","display_name":"Anoop Sarkar","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anoop Sarkar","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017539699","display_name":"\u0130nan\u00e7 Birol","orcid":"https://orcid.org/0000-0003-0950-7839"},"institutions":[{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210133112"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Inanc Birol","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada","School of Computing Science, Simon Fraser University, Burnaby, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031099600"],"corresponding_institution_ids":["https://openalex.org/I18014758","https://openalex.org/I4210133112"],"apc_list":null,"apc_paid":null,"fwci":0.6973,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.74553055,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"27","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6841068267822266},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.589907169342041},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4917633831501007},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.35063350200653076},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1906137764453888}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6841068267822266},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.589907169342041},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4917633831501007},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.35063350200653076},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1906137764453888}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/w16-2904","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2904","pdf_url":"https://www.aclweb.org/anthology/W16-2904.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/w16-2904","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w16-2904","pdf_url":"https://www.aclweb.org/anthology/W16-2904.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th Workshop on Biomedical Natural Language Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4884267275","display_name":null,"funder_award_id":"RGPIN 262313","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5885290058","display_name":null,"funder_award_id":"RGPAS 446348","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6221715925","display_name":null,"funder_award_id":"RGPIN","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2508265673.pdf","grobid_xml":"https://content.openalex.org/works/W2508265673.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W1679133234","https://openalex.org/W1693107767","https://openalex.org/W1709989312","https://openalex.org/W1941318214","https://openalex.org/W2057052429","https://openalex.org/W2065963191","https://openalex.org/W2096953947","https://openalex.org/W2107005506","https://openalex.org/W2115562276","https://openalex.org/W2117198860","https://openalex.org/W2120679544","https://openalex.org/W2121227244","https://openalex.org/W2128392365","https://openalex.org/W2132085065","https://openalex.org/W2139823104","https://openalex.org/W2142016317","https://openalex.org/W2142523187","https://openalex.org/W2147880316","https://openalex.org/W2149369282","https://openalex.org/W2150969560","https://openalex.org/W2151075664","https://openalex.org/W2156515921","https://openalex.org/W2167474206","https://openalex.org/W2169491861","https://openalex.org/W2171825063","https://openalex.org/W2212494754","https://openalex.org/W2252979829","https://openalex.org/W2775952680","https://openalex.org/W2950577311","https://openalex.org/W3082731548"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W3204019825"],"abstract_inverted_index":{"The":[0],"rapidly":[1],"growing":[2],"biomedical":[3],"literature":[4],"has":[5],"been":[6],"a":[7],"challenging":[8],"target":[9],"for":[10],"natural":[11],"language":[12],"processing":[13],"algorithms.":[14],"One":[15],"of":[16],"the":[17],"tasks":[18],"these":[19],"algorithms":[20],"focus":[21],"on":[22],"is":[23],"called":[24],"named":[25],"entity":[26],"recognition":[27],"(NER),":[28],"often":[29],"employed":[30],"to":[31],"tag":[32],"gene":[33],"mentions.":[34]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
