{"id":"https://openalex.org/W2252225228","doi":"https://doi.org/10.18653/v1/w15-3812","title":"CoMAGD: Annotation of Gene-Depression Relations","display_name":"CoMAGD: Annotation of Gene-Depression Relations","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2252225228","doi":"https://doi.org/10.18653/v1/w15-3812","mag":"2252225228"},"language":"en","primary_location":{"id":"doi:10.18653/v1/w15-3812","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w15-3812","pdf_url":"https://www.aclweb.org/anthology/W15-3812.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 15","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/W15-3812.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022686531","display_name":"Rize Jin","orcid":"https://orcid.org/0000-0001-5537-0744"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Rize Jin","raw_affiliation_strings":["School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054994232","display_name":"Jinseon You","orcid":"https://orcid.org/0000-0001-9602-2519"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinseon You","raw_affiliation_strings":["School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018120852","display_name":"Jin\u2010Woo Chung","orcid":"https://orcid.org/0000-0003-3738-3386"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jin-Woo Chung","raw_affiliation_strings":["School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100666474","display_name":"Heejin Lee","orcid":"https://orcid.org/0000-0003-3403-683X"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["GB","KR"],"is_corresponding":false,"raw_author_name":"Hee-Jin Lee","raw_affiliation_strings":["School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","School of Informatics University of Edinburgh Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"School of Informatics University of Edinburgh Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069675691","display_name":"Maria Wolters","orcid":"https://orcid.org/0000-0002-3369-3558"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["GB","KR"],"is_corresponding":false,"raw_author_name":"Maria Wolters","raw_affiliation_strings":["School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","School of Informatics University of Edinburgh Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"School of Informatics University of Edinburgh Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100678933","display_name":"Jong Moon Park","orcid":"https://orcid.org/0000-0002-5852-3475"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["GB","KR"],"is_corresponding":false,"raw_author_name":"Jong Park","raw_affiliation_strings":["School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","School of Informatics University of Edinburgh Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing Korea Advanced Institute of Science and Technology 291 Daehak-ro, Daejeon, Republic of Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"School of Informatics University of Edinburgh Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022686531"],"corresponding_institution_ids":["https://openalex.org/I157485424"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08364656,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"104","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8650493621826172},{"id":"https://openalex.org/keywords/depression","display_name":"Depression (economics)","score":0.7077214121818542},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47250449657440186},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.46491461992263794},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4524872601032257},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3971289396286011},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3864780366420746},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.3620966672897339},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3613486886024475},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33109018206596375},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27551352977752686},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.269445538520813}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8650493621826172},{"id":"https://openalex.org/C2776867660","wikidata":"https://www.wikidata.org/wiki/Q1814941","display_name":"Depression (economics)","level":2,"score":0.7077214121818542},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47250449657440186},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.46491461992263794},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4524872601032257},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3971289396286011},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3864780366420746},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3620966672897339},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3613486886024475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33109018206596375},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27551352977752686},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.269445538520813},{"id":"https://openalex.org/C139719470","wikidata":"https://www.wikidata.org/wiki/Q39680","display_name":"Macroeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.18653/v1/w15-3812","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w15-3812","pdf_url":"https://www.aclweb.org/anthology/W15-3812.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 15","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/91874939-b230-4f1f-9b92-eb15e7878432","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/91874939-b230-4f1f-9b92-eb15e7878432","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jin, R, You, J, Chung, J-W, Lee, H-J, Wolters, M & Park, J 2015, CoMAGD: Annotation of Gene-Depression Relations. in Proceedings of BioNLP 15. Beijing, China, pp. 104-113. < http://www.aclweb.org/anthology/W15-3812 >","raw_type":"contributionToPeriodical"},{"id":"pmh:oai:pure.ed.ac.uk:publications/91874939-b230-4f1f-9b92-eb15e7878432","is_oa":true,"landing_page_url":"http://www.aclweb.org/anthology/W15-3812","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.18653/v1/w15-3812","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w15-3812","pdf_url":"https://www.aclweb.org/anthology/W15-3812.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 15","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1274167916","display_name":null,"funder_award_id":"NRF-2014","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G2269847148","display_name":null,"funder_award_id":"NRF-2014R1A2A1","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"},{"id":"https://openalex.org/G3942910960","display_name":null,"funder_award_id":"(NRF) grant","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8080689565","display_name":null,"funder_award_id":"NRF-2014R1A","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G982292920","display_name":null,"funder_award_id":"NRF-20","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2252225228.pdf","grobid_xml":"https://content.openalex.org/works/W2252225228.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W122290181","https://openalex.org/W1508977358","https://openalex.org/W1532161976","https://openalex.org/W1600005654","https://openalex.org/W1732623802","https://openalex.org/W1830777114","https://openalex.org/W1971374042","https://openalex.org/W2025083459","https://openalex.org/W2041187413","https://openalex.org/W2053472601","https://openalex.org/W2065963191","https://openalex.org/W2075655036","https://openalex.org/W2083403896","https://openalex.org/W2107005506","https://openalex.org/W2121570534","https://openalex.org/W2125712079","https://openalex.org/W2128392365","https://openalex.org/W2129579709","https://openalex.org/W2129800387","https://openalex.org/W2144086069","https://openalex.org/W2146954401","https://openalex.org/W2149803936","https://openalex.org/W2158419693","https://openalex.org/W2159230276","https://openalex.org/W2251002982"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"Clinical":[0],"depression":[1,40,106],"is":[2],"a":[3,57,69],"mental":[4],"disorder":[5],"involving":[6],"genetics":[7],"and":[8,18,27,46,92,108],"environmental":[9],"factors.":[10],"Although":[11],"much":[12],"work":[13],"studied":[14],"its":[15,49],"genetic":[16],"causes":[17],"numerous":[19],"candidate":[20],"genes":[21],"have":[22,41],"consequently":[23],"been":[24,43],"looked":[25],"into":[26],"reported":[28],"in":[29,97],"the":[30,89,93,115],"biomedical":[31],"literature,":[32],"no":[33],"gene":[34,84],"expression":[35,85],"changes":[36],"or":[37],"mutations":[38],"regarding":[39,102],"yet":[42],"adequately":[44],"collected":[45],"analyzed":[47],"for":[48,61,111],"full":[50],"pathophysiology.":[51],"In":[52],"this":[53],"paper,":[54],"we":[55],"present":[56],"depression-specific":[58],"annotated":[59],"corpus":[60],"text":[62],"mining":[63],"systems":[64],"that":[65],"target":[66],"at":[67],"providing":[68],"concise":[70],"review":[71],"of":[72,105],"depression-gene":[73],"relations,":[74],"as":[75,77,83],"well":[76],"capturing":[78],"complex":[79],"biological":[80],"events":[81],"such":[82],"changes.":[86],"We":[87,99],"describe":[88],"annotation":[90,95],"scheme":[91],"conducted":[94],"procedure":[96],"detail.":[98],"discuss":[100],"issues":[101],"proper":[103],"recognition":[104],"terms":[107],"entity":[109],"interactions":[110],"future":[112],"approaches":[113],"to":[114],"task.":[116]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
