{"id":"https://openalex.org/W2251571525","doi":"https://doi.org/10.18653/v1/w15-3808","title":"Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs","display_name":"Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2251571525","doi":"https://doi.org/10.18653/v1/w15-3808","mag":"2251571525"},"language":"en","primary_location":{"id":"doi:10.18653/v1/w15-3808","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w15-3808","pdf_url":"https://www.aclweb.org/anthology/W15-3808.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 15","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/W15-3808.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044071922","display_name":"Mohsen Hassan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Mohsen Hassan","raw_affiliation_strings":["LORIA (CNRS, Inria, Universit de Lorraine), Campus scientifique, Vandoeuvre-ls-Nancy, F-54506, France"],"affiliations":[{"raw_affiliation_string":"LORIA (CNRS, Inria, Universit de Lorraine), Campus scientifique, Vandoeuvre-ls-Nancy, F-54506, France","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I90183372","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001160924","display_name":"Olfa Makkaoui","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olfa Makkaoui","raw_affiliation_strings":["LORIA (CNRS, Inria, Universit de Lorraine), Campus scientifique, Vandoeuvre-ls-Nancy, F-54506, France"],"affiliations":[{"raw_affiliation_string":"LORIA (CNRS, Inria, Universit de Lorraine), Campus scientifique, Vandoeuvre-ls-Nancy, F-54506, France","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I90183372","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082641159","display_name":"Adrien Coulet","orcid":"https://orcid.org/0000-0002-1466-062X"},"institutions":[{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Adrien Coulet","raw_affiliation_strings":["LORIA (CNRS, Inria, Universit de Lorraine), Campus scientifique, Vandoeuvre-ls-Nancy, F-54506, France"],"affiliations":[{"raw_affiliation_string":"LORIA (CNRS, Inria, Universit de Lorraine), Campus scientifique, Vandoeuvre-ls-Nancy, F-54506, France","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I90183372","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":null,"display_name":"Yannick Toussain","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yannick Toussain","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5044071922"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210121838","https://openalex.org/I90183372"],"apc_list":null,"apc_paid":null,"fwci":0.4376,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.65819632,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"71","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9713000059127808,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.8092055916786194},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7195210456848145},{"id":"https://openalex.org/keywords/dependency-grammar","display_name":"Dependency grammar","score":0.6014552712440491},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5900368094444275},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5784848928451538},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4354126453399658},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10014292597770691}],"concepts":[{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.8092055916786194},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7195210456848145},{"id":"https://openalex.org/C164883195","wikidata":"https://www.wikidata.org/wiki/Q674834","display_name":"Dependency grammar","level":3,"score":0.6014552712440491},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5900368094444275},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5784848928451538},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4354126453399658},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10014292597770691},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/w15-3808","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w15-3808","pdf_url":"https://www.aclweb.org/anthology/W15-3808.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 15","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/w15-3808","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/w15-3808","pdf_url":"https://www.aclweb.org/anthology/W15-3808.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 15","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7599999904632568,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2251571525.pdf","grobid_xml":"https://content.openalex.org/works/W2251571525.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W113629972","https://openalex.org/W135349062","https://openalex.org/W1500902855","https://openalex.org/W1508977358","https://openalex.org/W1550258693","https://openalex.org/W1574901103","https://openalex.org/W1981082061","https://openalex.org/W1991199262","https://openalex.org/W2027424931","https://openalex.org/W2032702205","https://openalex.org/W2036935277","https://openalex.org/W2038721957","https://openalex.org/W2064030835","https://openalex.org/W2074755764","https://openalex.org/W2102281458","https://openalex.org/W2103931177","https://openalex.org/W2125680435","https://openalex.org/W2138627627","https://openalex.org/W2150417477","https://openalex.org/W2156930958","https://openalex.org/W2158505321","https://openalex.org/W2159583324","https://openalex.org/W2166111585","https://openalex.org/W2183728171","https://openalex.org/W2250573263","https://openalex.org/W2251108261"],"related_works":["https://openalex.org/W2098784136","https://openalex.org/W63925617","https://openalex.org/W2151754849","https://openalex.org/W2252142543","https://openalex.org/W122365991","https://openalex.org/W4297807309","https://openalex.org/W3123290982","https://openalex.org/W3153965608","https://openalex.org/W2405117110","https://openalex.org/W2108975147"],"abstract_inverted_index":{"Disease-symptom":[0],"relationships":[1,41],"are":[2,14,91],"of":[3,21,57,106,109,118],"primary":[4],"importance":[5],"for":[6,37,47,50,96],"biomedical":[7],"informatics,":[8],"but":[9],"databases":[10],"that":[11],"catalog":[12],"them":[13],"incomplete":[15],"in":[16,25,31],"comparison":[17],"with":[18],"the":[19,22,26,66,89,119,126],"state":[20],"art":[23],"available":[24],"scientific":[27],"literature.":[28],"We":[29,100],"propose":[30],"this":[32],"paper":[33],"a":[34,104],"novel":[35],"method":[36,54],"automatically":[38],"extracting":[39,97],"disease-symptom":[40,86,98],"from":[42,65],"text,":[43],"called":[44],"SPARE":[45,102],"(standing":[46],"Syntactic":[48],"PAttern":[49],"Relationship":[51],"Extraction).":[52],"This":[53],"is":[55,135],"composed":[56],"3":[58],"successive":[59],"steps:":[60],"first,":[61],"we":[62,70],"learn":[63],"patterns":[64,73,90],"dependency":[67],"graphs;":[68],"second,":[69],"select":[71],"best":[72,132],"based":[74],"on":[75,93,103,125],"their":[76],"respective":[77],"quality":[78,117,128,143],"and":[79,129,142],"specificity":[80],"(their":[81],"ability":[82],"to":[83,112],"identify":[84],"only":[85],"relationships);":[87],"finally,":[88],"used":[92],"new":[94],"texts":[95],"relationships.":[99],"experimented":[101],"corpus":[105],"121,796":[107],"abstracts":[108],"PubMed":[110],"related":[111],"457":[113],"rare":[114],"diseases.":[115],"The":[116,131],"extraction":[120],"has":[121],"been":[122],"evaluated":[123],"depending":[124],"pattern":[127],"specificity.":[130],"F-measure":[133],"obtained":[134],"55.65%":[136],"(for":[137],"speci":[138],"f":[139],"icity":[140],"0.5":[141],"0.5).":[144]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
