{"id":"https://openalex.org/W2798373858","doi":"https://doi.org/10.18653/v1/p18-1019","title":"A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature","display_name":"A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2798373858","doi":"https://doi.org/10.18653/v1/p18-1019","mag":"2798373858","pmid":"https://pubmed.ncbi.nlm.nih.gov/30305770"},"language":"en","primary_location":{"id":"doi:10.18653/v1/p18-1019","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/p18-1019","pdf_url":"https://www.aclweb.org/anthology/P18-1019.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/P18-1019.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044071498","display_name":"Benjamin Nye","orcid":null},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Nye","raw_affiliation_strings":["Northeastern University, nye.b@husky.neu.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeastern University, nye.b@husky.neu.edu","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021057186","display_name":"Junyi Jessy Li","orcid":"https://orcid.org/0000-0002-2550-5262"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junyi Jessy Li","raw_affiliation_strings":["UT Austin, jessy@austin.utexas.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UT Austin, jessy@austin.utexas.edu","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042032005","display_name":"Roma Patel","orcid":"https://orcid.org/0000-0003-2075-2560"},"institutions":[{"id":"https://openalex.org/I4210096112","display_name":"Rutgers Sexual and Reproductive Health and Rights","ror":"https://ror.org/00rcvgx40","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210096112"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Roma Patel","raw_affiliation_strings":["Rutgers University, romapatel996@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rutgers University, romapatel996@gmail.com","institution_ids":["https://openalex.org/I4210096112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112593580","display_name":"Yinfei Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102747","display_name":"Jiangyin People's Hospital","ror":"https://ror.org/01khmxb55","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210102747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yinfei Yang","raw_affiliation_strings":["yangyin7@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"yangyin7@gmail.com","institution_ids":["https://openalex.org/I4210102747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036860076","display_name":"Iain Marshall","orcid":"https://orcid.org/0000-0003-2594-2654"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Iain Marshall","raw_affiliation_strings":["King's College London, iain.marshall@kcl.ac.uk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King's College London, iain.marshall@kcl.ac.uk","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032571629","display_name":"Ani Nenkova","orcid":"https://orcid.org/0000-0002-5825-7875"},"institutions":[{"id":"https://openalex.org/I313325847","display_name":"Salesian Pontifical University","ror":"https://ror.org/00qpbmv96","country_code":"IT","type":"education","lineage":["https://openalex.org/I313325847"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ani Nenkova","raw_affiliation_strings":["UPenn, nenkova@seas.upenn.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UPenn, nenkova@seas.upenn.edu","institution_ids":["https://openalex.org/I313325847"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036790226","display_name":"Byron Wallace","orcid":"https://orcid.org/0000-0003-2409-7735"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]},{"id":"https://openalex.org/I4210152629","display_name":"Eastern University","ror":"https://ror.org/05e2ncr14","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210152629"]}],"countries":["BD","US"],"is_corresponding":false,"raw_author_name":"Byron Wallace","raw_affiliation_strings":["Northeastern University, b.wallace@northeastern.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeastern University, b.wallace@northeastern.edu","institution_ids":["https://openalex.org/I12912129","https://openalex.org/I4210152629"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2018","issue":null,"first_page":"197","last_page":"207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/psychological-intervention","display_name":"Psychological intervention","score":0.678679347038269},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.6478791236877441},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6213663816452026},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6146937608718872},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5661412477493286},{"id":"https://openalex.org/keywords/medical-literature","display_name":"Medical literature","score":0.4879605174064636},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4795543849468231},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4769129455089569},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.467492014169693},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.34092116355895996},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3264460861682892},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1923806071281433},{"id":"https://openalex.org/keywords/nursing","display_name":"Nursing","score":0.1547790765762329},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10806682705879211}],"concepts":[{"id":"https://openalex.org/C27415008","wikidata":"https://www.wikidata.org/wiki/Q7256382","display_name":"Psychological intervention","level":2,"score":0.678679347038269},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.6478791236877441},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6213663816452026},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6146937608718872},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5661412477493286},{"id":"https://openalex.org/C2779231881","wikidata":"https://www.wikidata.org/wiki/Q5977147","display_name":"Medical literature","level":2,"score":0.4879605174064636},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4795543849468231},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4769129455089569},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.467492014169693},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.34092116355895996},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3264460861682892},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1923806071281433},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.1547790765762329},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10806682705879211},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.18653/v1/p18-1019","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/p18-1019","pdf_url":"https://www.aclweb.org/anthology/P18-1019.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},{"id":"pmid:30305770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30305770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the conference. Association for Computational Linguistics. Meeting","raw_type":null},{"id":"pmh:oai:arXiv.org:1806.04185","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1806.04185","pdf_url":"https://arxiv.org/pdf/1806.04185","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:5119158","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6174533","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6174533","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6174533","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc Conf Assoc Comput Linguist Meet","raw_type":"Text"},{"id":"doi:10.48550/arxiv.1806.04185","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1806.04185","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"},{"id":"mag:2798373858","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.18653/v1/p18-1019","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/p18-1019","pdf_url":"https://www.aclweb.org/anthology/P18-1019.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8500000238418579}],"awards":[{"id":"https://openalex.org/G6100344857","display_name":null,"funder_award_id":"UH2CA203711","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6197774339","display_name":null,"funder_award_id":"UH2 CA203711","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8824100907","display_name":null,"funder_award_id":"MR/N015185/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2798373858.pdf","grobid_xml":"https://content.openalex.org/works/W2798373858.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W9014458","https://openalex.org/W49437421","https://openalex.org/W108763474","https://openalex.org/W1818810666","https://openalex.org/W1977535059","https://openalex.org/W1988584482","https://openalex.org/W2024242837","https://openalex.org/W2044986849","https://openalex.org/W2053301680","https://openalex.org/W2063993968","https://openalex.org/W2123399010","https://openalex.org/W2123442489","https://openalex.org/W2129494713","https://openalex.org/W2134568263","https://openalex.org/W2146668368","https://openalex.org/W2147880316","https://openalex.org/W2252006133","https://openalex.org/W2296283641","https://openalex.org/W2418587547","https://openalex.org/W2484269232","https://openalex.org/W2565928591","https://openalex.org/W2593758073","https://openalex.org/W2619694921","https://openalex.org/W2740579382","https://openalex.org/W2741023348","https://openalex.org/W2755149525"],"related_works":["https://openalex.org/W3204796902","https://openalex.org/W3186656778","https://openalex.org/W2474243075","https://openalex.org/W2980023705","https://openalex.org/W283797413","https://openalex.org/W2735534162","https://openalex.org/W3011391370","https://openalex.org/W3139761694","https://openalex.org/W2252100726","https://openalex.org/W2113021202","https://openalex.org/W2183115042","https://openalex.org/W3156855582","https://openalex.org/W3115344642","https://openalex.org/W3137424942","https://openalex.org/W2251507157","https://openalex.org/W2949479579","https://openalex.org/W2765684156","https://openalex.org/W3011079674","https://openalex.org/W137536386","https://openalex.org/W3089862415"],"abstract_inverted_index":{"We":[0,69,85,97],"present":[1],"a":[2,51,65,73,100],"corpus":[3,93],"of":[4,9,20,76,81,102,110,117],"5,000":[5],"richly":[6],"annotated":[7,49],"abstracts":[8],"medical":[10,67,112],"articles":[11],"describing":[12],"clinical":[13],"randomized":[14],"controlled":[15],"trials.":[16],"Annotations":[17],"include":[18],"demarcations":[19],"text":[21],"spans":[22,46],"that":[23,106],"describe":[24,86],"the":[25,29,39,92,111,115],"Patient":[26],"population":[27],"enrolled,":[28],"Interventions":[30],"studied":[31],"and":[32,38,62,83,91,114],"to":[33],"what":[34],"they":[35],"were":[36],"Compared,":[37],"Outcomes":[40],"measured":[41],"(the":[42],"'PICO'":[43],"elements).":[44],"These":[45],"are":[47,60],"further":[48],"at":[50],"more":[52],"granular":[53],"level,":[54],"e.g.,":[55],"individual":[56],"interventions":[57],"within":[58],"them":[59],"marked":[61],"mapped":[63],"onto":[64],"structured":[66],"vocabulary.":[68],"acquired":[70],"annotations":[71],"from":[72],"diverse":[74],"set":[75,101],"workers":[77],"with":[78],"varying":[79],"levels":[80],"expertise":[82],"cost.":[84],"our":[87],"data":[88],"collection":[89],"process":[90],"itself":[94],"in":[95],"detail.":[96],"then":[98],"outline":[99],"challenging":[103],"NLP":[104],"tasks":[105],"would":[107],"aid":[108],"searching":[109],"literature":[113],"practice":[116],"evidence-based":[118],"medicine.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2022-08-20T00:00:00"}
