{"id":"https://openalex.org/W2982940135","doi":"https://doi.org/10.18653/v1/d19-5723","title":"Bacteria Biotope Relation Extraction via Lexical Chains and Dependency Graphs","display_name":"Bacteria Biotope Relation Extraction via Lexical Chains and Dependency Graphs","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2982940135","doi":"https://doi.org/10.18653/v1/d19-5723","mag":"2982940135"},"language":"en","primary_location":{"id":"doi:10.18653/v1/d19-5723","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5723","pdf_url":"https://www.aclweb.org/anthology/D19-5723.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/D19-5723.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112912499","display_name":"Wuti Xiong","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wuti Xiong","raw_affiliation_strings":[". School of Cyber Science and Engineering, Wuhan University, China"],"affiliations":[{"raw_affiliation_string":". School of Cyber Science and Engineering, Wuhan University, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325881","display_name":"Fei Li","orcid":"https://orcid.org/0000-0003-1816-1761"},"institutions":[{"id":"https://openalex.org/I133738476","display_name":"University of Massachusetts Lowell","ror":"https://ror.org/03hamhx47","country_code":"US","type":"education","lineage":["https://openalex.org/I133738476"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fei Li","raw_affiliation_strings":[". Department of Computer Science, UMass Lowell, USA"],"affiliations":[{"raw_affiliation_string":". Department of Computer Science, UMass Lowell, USA","institution_ids":["https://openalex.org/I133738476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062363830","display_name":"Ming Cheng","orcid":"https://orcid.org/0000-0002-4859-2004"},"institutions":[{"id":"https://openalex.org/I4210156804","display_name":"First Affiliated Hospital of Zhengzhou University","ror":"https://ror.org/056swr059","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156804"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Cheng","raw_affiliation_strings":[". Department of Medical Information, The First Affiliated Hospital of Zhengzhou University, China"],"affiliations":[{"raw_affiliation_string":". Department of Medical Information, The First Affiliated Hospital of Zhengzhou University, China","institution_ids":["https://openalex.org/I4210156804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017601806","display_name":"Hong Yu","orcid":"https://orcid.org/0000-0001-9263-5035"},"institutions":[{"id":"https://openalex.org/I133738476","display_name":"University of Massachusetts Lowell","ror":"https://ror.org/03hamhx47","country_code":"US","type":"education","lineage":["https://openalex.org/I133738476"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong Yu","raw_affiliation_strings":[". Department of Computer Science, UMass Lowell, USA"],"affiliations":[{"raw_affiliation_string":". Department of Computer Science, UMass Lowell, USA","institution_ids":["https://openalex.org/I133738476"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101801149","display_name":"Donghong Ji","orcid":"https://orcid.org/0000-0003-4020-983X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Donghong Ji","raw_affiliation_strings":[". School of Cyber Science and Engineering, Wuhan University, China"],"affiliations":[{"raw_affiliation_string":". School of Cyber Science and Engineering, Wuhan University, China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101801149"],"corresponding_institution_ids":["https://openalex.org/I37461747"],"apc_list":null,"apc_paid":null,"fwci":0.5154,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.65433216,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"158","last_page":"167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8084765672683716},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6601623296737671},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.6264855265617371},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6005405187606812},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5771006345748901},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5637579560279846},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5619739294052124},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5551344752311707},{"id":"https://openalex.org/keywords/biotope","display_name":"Biotope","score":0.543736457824707},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5359652042388916},{"id":"https://openalex.org/keywords/dependency-graph","display_name":"Dependency graph","score":0.46851205825805664},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.46512293815612793},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4618036150932312},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4544315040111542},{"id":"https://openalex.org/keywords/generality","display_name":"Generality","score":0.42461585998535156},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25266504287719727},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23525506258010864},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.09443846344947815},{"id":"https://openalex.org/keywords/habitat","display_name":"Habitat","score":0.0917891263961792},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.0844275951385498}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8084765672683716},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6601623296737671},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.6264855265617371},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6005405187606812},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5771006345748901},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5637579560279846},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5619739294052124},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5551344752311707},{"id":"https://openalex.org/C112149622","wikidata":"https://www.wikidata.org/wiki/Q175208","display_name":"Biotope","level":3,"score":0.543736457824707},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5359652042388916},{"id":"https://openalex.org/C16311509","wikidata":"https://www.wikidata.org/wiki/Q4148050","display_name":"Dependency graph","level":3,"score":0.46851205825805664},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.46512293815612793},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4618036150932312},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4544315040111542},{"id":"https://openalex.org/C2780767217","wikidata":"https://www.wikidata.org/wiki/Q5532421","display_name":"Generality","level":2,"score":0.42461585998535156},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25266504287719727},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23525506258010864},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.09443846344947815},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.0917891263961792},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.0844275951385498},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/d19-5723","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5723","pdf_url":"https://www.aclweb.org/anthology/D19-5723.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/d19-5723","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5723","pdf_url":"https://www.aclweb.org/anthology/D19-5723.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6800000071525574,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G2976327440","display_name":null,"funder_award_id":"61802350","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3214160367","display_name":null,"funder_award_id":"No. 11","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G509611347","display_name":null,"funder_award_id":"No. 61772378","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5167091242","display_name":null,"funder_award_id":"No. 1","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5167616079","display_name":null,"funder_award_id":"11&amp;ZD189","funder_id":"https://openalex.org/F4320335869","funder_display_name":"National Social Science Fund of China"},{"id":"https://openalex.org/G6442732870","display_name":null,"funder_award_id":"61772378","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320331088","display_name":"Natural Science Foundation for Young Scientists of Shanxi Province","ror":null},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null},{"id":"https://openalex.org/F4320335869","display_name":"National Social Science Fund of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2982940135.pdf","grobid_xml":"https://content.openalex.org/works/W2982940135.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W1710422233","https://openalex.org/W1837399425","https://openalex.org/W2032566933","https://openalex.org/W2069143585","https://openalex.org/W2107530479","https://openalex.org/W2123442489","https://openalex.org/W2138627627","https://openalex.org/W2140887277","https://openalex.org/W2250451826","https://openalex.org/W2251022661","https://openalex.org/W2251279337","https://openalex.org/W2251697800","https://openalex.org/W2252145363","https://openalex.org/W2507883388","https://openalex.org/W2511500211","https://openalex.org/W2515462165","https://openalex.org/W2517194566","https://openalex.org/W2518463060","https://openalex.org/W2527896214","https://openalex.org/W2760138945","https://openalex.org/W2772187205","https://openalex.org/W2809349863","https://openalex.org/W2892094955","https://openalex.org/W2916355958","https://openalex.org/W2951309718","https://openalex.org/W2952179106","https://openalex.org/W2952768212","https://openalex.org/W2963014179","https://openalex.org/W2963020213","https://openalex.org/W2963021258","https://openalex.org/W2963171262","https://openalex.org/W2963403868","https://openalex.org/W2963446712","https://openalex.org/W2963907629","https://openalex.org/W2964167098","https://openalex.org/W2964217331","https://openalex.org/W2964222246","https://openalex.org/W2983315135","https://openalex.org/W4385245566"],"related_works":["https://openalex.org/W2064314529","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2444550338","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":{"In":[0,41],"this":[1,42],"article,":[2],"we":[3,44],"describe":[4],"our":[5],"approach":[6,48],"for":[7,49],"the":[8,16,26],"Bacteria":[9],"Biotopes":[10],"relation":[11],"extraction":[12],"(BBrel)":[13],"subtask":[14],"in":[15],"BioNLP":[17],"Shared":[18],"Task":[19],"2019.":[20],"This":[21],"task":[22],"aims":[23],"to":[24],"promote":[25],"development":[27],"of":[28],"text":[29],"mining":[30],"systems":[31],"that":[32],"extract":[33],"relationships":[34],"between":[35],"Microorganism,":[36],"Habitat":[37],"and":[38],"Phenotype":[39],"entities.":[40],"paper,":[43],"propose":[45],"a":[46],"novel":[47],"dependency":[50,59],"graph":[51,60],"construction":[52],"based":[53],"on":[54],"lexical":[55],"chains,":[56],"so":[57],"one":[58,63],"can":[61],"represent":[62],"or":[64],"multiple":[65],"sentences.":[66]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
