{"id":"https://openalex.org/W2985461273","doi":"https://doi.org/10.18653/v1/d19-5722","title":"BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes","display_name":"BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2985461273","doi":"https://doi.org/10.18653/v1/d19-5722","mag":"2985461273"},"language":"en","primary_location":{"id":"doi:10.18653/v1/d19-5722","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5722","pdf_url":"https://www.aclweb.org/anthology/D19-5722.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/D19-5722.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072888371","display_name":"\u0130lknur Karaden\u0131z","orcid":"https://orcid.org/0000-0002-7097-6143"},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I4210099585","display_name":"Industrievereinigung Kunststoffverpackungen","ror":"https://ror.org/00yy4hw75","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210099585"]},{"id":"https://openalex.org/I167234411","display_name":"I\u015f\u0131k University","ror":"https://ror.org/02j8k6t75","country_code":"TR","type":"education","lineage":["https://openalex.org/I167234411"]}],"countries":["DE","TR"],"is_corresponding":true,"raw_author_name":"\u0130lknur Karadeniz","raw_affiliation_strings":["Bogazic \u00b8i University","Is \u00b8\u0131k University"],"affiliations":[{"raw_affiliation_string":"Bogazic \u00b8i University","institution_ids":["https://openalex.org/I4405392"]},{"raw_affiliation_string":"Is \u00b8\u0131k University","institution_ids":["https://openalex.org/I4210099585","https://openalex.org/I167234411"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024695300","display_name":"\u00d6mer Faruk Tuna","orcid":"https://orcid.org/0000-0002-6214-6262"},"institutions":[{"id":"https://openalex.org/I4210099585","display_name":"Industrievereinigung Kunststoffverpackungen","ror":"https://ror.org/00yy4hw75","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210099585"]},{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I167234411","display_name":"I\u015f\u0131k University","ror":"https://ror.org/02j8k6t75","country_code":"TR","type":"education","lineage":["https://openalex.org/I167234411"]}],"countries":["DE","TR"],"is_corresponding":false,"raw_author_name":"\u00d6mer Faruk Tuna","raw_affiliation_strings":["Is \u00b8\u0131k University","Bogazic \u00b8i University"],"affiliations":[{"raw_affiliation_string":"Is \u00b8\u0131k University","institution_ids":["https://openalex.org/I4210099585","https://openalex.org/I167234411"]},{"raw_affiliation_string":"Bogazic \u00b8i University","institution_ids":["https://openalex.org/I4405392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030252794","display_name":"Arzucan \u00d6zg\u00fcr","orcid":"https://orcid.org/0000-0001-8376-1056"},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]},{"id":"https://openalex.org/I4210099585","display_name":"Industrievereinigung Kunststoffverpackungen","ror":"https://ror.org/00yy4hw75","country_code":"DE","type":"other","lineage":["https://openalex.org/I4210099585"]},{"id":"https://openalex.org/I167234411","display_name":"I\u015f\u0131k University","ror":"https://ror.org/02j8k6t75","country_code":"TR","type":"education","lineage":["https://openalex.org/I167234411"]}],"countries":["DE","TR"],"is_corresponding":false,"raw_author_name":"Arzucan \u00d6zg\u00fcr","raw_affiliation_strings":["Is \u00b8\u0131k University","Bogazic \u00b8i University"],"affiliations":[{"raw_affiliation_string":"Is \u00b8\u0131k University","institution_ids":["https://openalex.org/I4210099585","https://openalex.org/I167234411"]},{"raw_affiliation_string":"Bogazic \u00b8i University","institution_ids":["https://openalex.org/I4405392"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072888371"],"corresponding_institution_ids":["https://openalex.org/I167234411","https://openalex.org/I4210099585","https://openalex.org/I4405392"],"apc_list":null,"apc_paid":null,"fwci":0.3436,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60343113,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"150","last_page":"157"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biotope","display_name":"Biotope","score":0.8160402774810791},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7333828806877136},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7136822938919067},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.611934244632721},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5928546786308289},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.592621922492981},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5802242755889893},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4893874526023865},{"id":"https://openalex.org/keywords/norm","display_name":"Norm (philosophy)","score":0.4709121882915497},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.41821837425231934},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.32476431131362915},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1258910596370697},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.1158420741558075},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07086068391799927},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.06927019357681274},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06000056862831116}],"concepts":[{"id":"https://openalex.org/C112149622","wikidata":"https://www.wikidata.org/wiki/Q175208","display_name":"Biotope","level":3,"score":0.8160402774810791},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7333828806877136},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7136822938919067},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.611934244632721},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5928546786308289},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.592621922492981},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5802242755889893},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4893874526023865},{"id":"https://openalex.org/C191795146","wikidata":"https://www.wikidata.org/wiki/Q3878446","display_name":"Norm (philosophy)","level":2,"score":0.4709121882915497},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.41821837425231934},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.32476431131362915},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1258910596370697},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.1158420741558075},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07086068391799927},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.06927019357681274},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06000056862831116},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.18653/v1/d19-5722","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5722","pdf_url":"https://www.aclweb.org/anthology/D19-5722.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},{"id":"pmh:oai:acikerisim.isikun.edu.tr:11729/5365","is_oa":true,"landing_page_url":"https://hdl.handle.net/11729/5365","pdf_url":null,"source":{"id":"https://openalex.org/S4306401174","display_name":"Akademik A\u00e7\u0131k Eri\u015fim (I\u015f\u0131k \u00dcniversitesi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I167234411","host_organization_name":"I\u015f\u0131k University","host_organization_lineage":["https://openalex.org/I167234411"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Object"}],"best_oa_location":{"id":"doi:10.18653/v1/d19-5722","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5722","pdf_url":"https://www.aclweb.org/anthology/D19-5722.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2985461273.pdf","grobid_xml":"https://content.openalex.org/works/W2985461273.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1493270114","https://openalex.org/W1895979660","https://openalex.org/W1914733988","https://openalex.org/W1987170279","https://openalex.org/W2046747418","https://openalex.org/W2060942759","https://openalex.org/W2067704478","https://openalex.org/W2074640468","https://openalex.org/W2097606805","https://openalex.org/W2101265630","https://openalex.org/W2123439964","https://openalex.org/W2128049108","https://openalex.org/W2129113459","https://openalex.org/W2136437513","https://openalex.org/W2142016317","https://openalex.org/W2142135462","https://openalex.org/W2153579005","https://openalex.org/W2250232417","https://openalex.org/W2251279337","https://openalex.org/W2507883388","https://openalex.org/W2510327534","https://openalex.org/W2515248967","https://openalex.org/W2518463060","https://openalex.org/W2556858158","https://openalex.org/W2740530567","https://openalex.org/W2741379117","https://openalex.org/W2763990719","https://openalex.org/W2941623535","https://openalex.org/W2949894546","https://openalex.org/W2983315135","https://openalex.org/W4294170691"],"related_works":["https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"our":[3],"participation":[4,17],"at":[5],"the":[6,11,22,26,30,36,39,42,50,62,76,92,95,100],"Bacteria":[7,27],"Biotope":[8,28],"Task":[9,14],"of":[10,25,32,38,52],"BioNLP":[12],"Shared":[13],"2019.":[15],"Our":[16],"includes":[18],"two":[19,23],"systems":[20],"for":[21,91],"subtasks":[24],"Task:":[29],"normalization":[31,51],"entities":[33,43],"(BB-norm)":[34],"and":[35,58],"identification":[37],"relations":[40],"between":[41],"given":[44],"a":[45],"biomedical":[46],"text":[47],"(BB-rel).":[48],"For":[49,61],"entities,":[53],"we":[54],"utilized":[55],"word":[56],"embeddings":[57],"syntactic":[59],"re-ranking.":[60],"relation":[63],"extraction":[64],"task,":[65,94],"pre-defined":[66],"rules":[67],"are":[68,73],"used.":[69],"Although":[70],"both":[71],"approaches":[72],"unsupervised,":[74],"in":[75],"sense":[77],"that":[78,99],"they":[79,86],"do":[80],"not":[81],"need":[82],"any":[83],"labeled":[84,113],"data,":[85],"achieved":[87],"promising":[88],"results.":[89],"Especially,":[90],"BB-norm":[93],"results":[96],"have":[97],"shown":[98],"proposed":[101],"method":[102],"performs":[103],"as":[104,106],"good":[105],"deep":[107],"learning":[108],"based":[109],"methods,":[110],"which":[111],"require":[112],"data.":[114]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
