{"id":"https://openalex.org/W2985754007","doi":"https://doi.org/10.18653/v1/d19-5721","title":"An ensemble CNN method for biomedical entity normalization","display_name":"An ensemble CNN method for biomedical entity normalization","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2985754007","doi":"https://doi.org/10.18653/v1/d19-5721","mag":"2985754007"},"language":"en","primary_location":{"id":"doi:10.18653/v1/d19-5721","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5721","pdf_url":"https://www.aclweb.org/anthology/D19-5721.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/D19-5721.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103197872","display_name":"Deng Pan","orcid":"https://orcid.org/0000-0002-1302-9182"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Pan Deng","raw_affiliation_strings":["An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100627250","display_name":"Haipeng Chen","orcid":"https://orcid.org/0000-0003-0572-8888"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Haipeng Chen","raw_affiliation_strings":["An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023725292","display_name":"Mengyao Huang","orcid":"https://orcid.org/0009-0003-5387-0229"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mengyao Huang","raw_affiliation_strings":["An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011573439","display_name":"Xiao-Wen Ruan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaowen Ruan","raw_affiliation_strings":["An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015300030","display_name":"Xu Liang","orcid":"https://orcid.org/0000-0001-5671-4510"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liang Xu","raw_affiliation_strings":["An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"An Technology (Shenzhen) Co., Ltd, Shenzhen, People's Republic of China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103197872"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8202,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.89250986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"143","last_page":"149"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8092341423034668},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7501157522201538},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6421338319778442},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5530022382736206},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5294677019119263},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5283763408660889},{"id":"https://openalex.org/keywords/biotope","display_name":"Biotope","score":0.4957207441329956},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47932231426239014},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.2058255672454834},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07261502742767334}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8092341423034668},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7501157522201538},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6421338319778442},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5530022382736206},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5294677019119263},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5283763408660889},{"id":"https://openalex.org/C112149622","wikidata":"https://www.wikidata.org/wiki/Q175208","display_name":"Biotope","level":3,"score":0.4957207441329956},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47932231426239014},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.2058255672454834},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07261502742767334},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/d19-5721","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5721","pdf_url":"https://www.aclweb.org/anthology/D19-5721.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/d19-5721","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5721","pdf_url":"https://www.aclweb.org/anthology/D19-5721.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2985754007.pdf","grobid_xml":"https://content.openalex.org/works/W2985754007.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1532325895","https://openalex.org/W1550258693","https://openalex.org/W1832693441","https://openalex.org/W2019363670","https://openalex.org/W2061167720","https://openalex.org/W2102443632","https://openalex.org/W2124181495","https://openalex.org/W2127589108","https://openalex.org/W2129038679","https://openalex.org/W2135451108","https://openalex.org/W2141869602","https://openalex.org/W2142135462","https://openalex.org/W2171590421","https://openalex.org/W2211192759","https://openalex.org/W2250232417","https://openalex.org/W2251559320","https://openalex.org/W2252145363","https://openalex.org/W2509884321","https://openalex.org/W2510327534","https://openalex.org/W2515729969","https://openalex.org/W2518463060","https://openalex.org/W2527896214","https://openalex.org/W2740530567","https://openalex.org/W2759245808","https://openalex.org/W2761714433","https://openalex.org/W2763990719","https://openalex.org/W2782437235","https://openalex.org/W2805776676","https://openalex.org/W2941623535","https://openalex.org/W2946690328","https://openalex.org/W3026721701","https://openalex.org/W6691503590"],"related_works":["https://openalex.org/W2427798806","https://openalex.org/W1965419689","https://openalex.org/W311807596","https://openalex.org/W2383221697","https://openalex.org/W2916147465","https://openalex.org/W1757434866","https://openalex.org/W2250232417","https://openalex.org/W2251431888","https://openalex.org/W2107530479","https://openalex.org/W2339319059"],"abstract_inverted_index":{"Different":[0],"representations":[1,27],"of":[2,60,82],"the":[3,21,25,79,83],"same":[4],"concept":[5],"could":[6],"often":[7],"be":[8],"seen":[9],"in":[10,46,51,78],"scientific":[11],"reports":[12],"and":[13,74],"publications.":[14],"Entity":[15],"normalization":[16],"(or":[17],"entity":[18],"linking)":[19],"is":[20,58,70],"task":[22,86],"to":[23,28,49],"match":[24],"different":[26],"their":[29],"standard":[30,52],"concepts.":[31],"In":[32],"this":[33],"paper,":[34],"we":[35],"present":[36],"a":[37,65],"two-step":[38],"ensemble":[39],"CNN":[40],"method":[41,57],"that":[42],"normalizes":[43],"microbiology-related":[44,67],"entities":[45,62],"free":[47],"text":[48],"concepts":[50],"dictionaries":[53],"1":[54],".":[55],"The":[56],"capable":[59],"linking":[61],"when":[63],"only":[64],"small":[66],"biomedical":[68],"corpus":[69],"available":[71],"for":[72],"training,":[73],"achieved":[75],"reasonable":[76],"performance":[77],"online":[80],"test":[81],"BioNLP-OST19":[84],"shared":[85],"Bacteria":[87],"Biotope.":[88]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
