{"id":"https://openalex.org/W2987875462","doi":"https://doi.org/10.18653/v1/d19-5710","title":"An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks","display_name":"An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2987875462","doi":"https://doi.org/10.18653/v1/d19-5710","mag":"2987875462"},"language":"en","primary_location":{"id":"doi:10.18653/v1/d19-5710","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5710","pdf_url":"https://www.aclweb.org/anthology/D19-5710.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/D19-5710.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100615783","display_name":"Yuxing Wang","orcid":"https://orcid.org/0000-0003-4510-2783"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxing Wang","raw_affiliation_strings":["Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033258894","display_name":"Kaiyin Zhou","orcid":"https://orcid.org/0000-0002-7314-9776"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaiyin Zhou","raw_affiliation_strings":["Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021799233","display_name":"Mina Gachloo","orcid":"https://orcid.org/0000-0002-8902-5268"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mina Gachloo","raw_affiliation_strings":["Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039800976","display_name":"Jingbo Xia","orcid":"https://orcid.org/0000-0002-7285-588X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jingbo Xia","raw_affiliation_strings":["Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Hubei Key Lab of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, 430070, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039800976"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":null,"apc_paid":null,"fwci":1.4491,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.82395678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"62","last_page":"71"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8354211449623108},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8278182148933411},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.7159950733184814},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6253198981285095},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5844013690948486},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5589609146118164},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4826374650001526},{"id":"https://openalex.org/keywords/track","display_name":"Track (disk drive)","score":0.4580878019332886},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.44983890652656555},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44492414593696594},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.42446279525756836},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.23314222693443298},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22758448123931885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10095283389091492}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8354211449623108},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8278182148933411},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.7159950733184814},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6253198981285095},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5844013690948486},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5589609146118164},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4826374650001526},{"id":"https://openalex.org/C89992363","wikidata":"https://www.wikidata.org/wiki/Q5961558","display_name":"Track (disk drive)","level":2,"score":0.4580878019332886},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.44983890652656555},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44492414593696594},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.42446279525756836},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.23314222693443298},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22758448123931885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10095283389091492},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/d19-5710","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5710","pdf_url":"https://www.aclweb.org/anthology/D19-5710.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/d19-5710","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d19-5710","pdf_url":"https://www.aclweb.org/anthology/D19-5710.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of The 5th Workshop on BioNLP Open Shared Tasks","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2987875462.pdf","grobid_xml":"https://content.openalex.org/works/W2987875462.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W1975212224","https://openalex.org/W1976316416","https://openalex.org/W2019772739","https://openalex.org/W2064675550","https://openalex.org/W2129767020","https://openalex.org/W2131546905","https://openalex.org/W2135505477","https://openalex.org/W2144354855","https://openalex.org/W2147880316","https://openalex.org/W2149803936","https://openalex.org/W2163107094","https://openalex.org/W2170189740","https://openalex.org/W2252278859","https://openalex.org/W2264379401","https://openalex.org/W2346452181","https://openalex.org/W2402268235","https://openalex.org/W2624892763","https://openalex.org/W2767891136","https://openalex.org/W2787229753","https://openalex.org/W2794085611","https://openalex.org/W2807245675","https://openalex.org/W2896457183","https://openalex.org/W2912030204","https://openalex.org/W2916562486","https://openalex.org/W2930950231","https://openalex.org/W2953846371","https://openalex.org/W2963341956","https://openalex.org/W2977393556","https://openalex.org/W3024839386"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W1976073696","https://openalex.org/W3165804307","https://openalex.org/W2358755282","https://openalex.org/W3184846108","https://openalex.org/W3015936091"],"abstract_inverted_index":{"The":[0,15,39,67,83],"active":[1],"gene":[2],"annotation":[3],"corpus":[4],"(AGAC)":[5],"was":[6,25,70],"developed":[7],"to":[8,27],"support":[9],"knowledge":[10],"discovery":[11],"for":[12,36,89],"drug":[13,37],"repurposing.":[14,38],"AGAC":[16,40,68],"track":[17,41,69],"of":[18,43,57,62,75,94,102],"the":[19,77,92,95],"BioNLP":[20,32],"Open":[21],"Shared":[22],"Tasks":[23],"2019":[24],"organized,":[26],"facilitate":[28],"cross-disciplinary":[29],"collaboration":[30],"across":[31],"and":[33,54,81,107],"Pharmacoinformatics":[34],"communities,":[35],"consists":[42],"three":[44],"subtasks:":[45],"1)":[46],"named":[47],"entity":[48],"recognition,":[49],"2)":[50],"thematic":[51],"relation":[52],"extraction,":[53],"3)":[55],"loss":[56],"function":[58,63],"(LOF)":[59],"/":[60],"gain":[61],"(GOF)":[64],"topic":[65,109],"classification.":[66],"participated":[71],"by":[72],"five":[73],"teams,":[74],"which":[76,97],"performance":[78],"is":[79],"compared":[80],"analyzed.":[82],"results":[84],"revealed":[85],"a":[86],"substantial":[87],"room":[88],"improvement":[90],"in":[91,100],"design":[93],"task,":[96],"we":[98],"analyzed":[99],"terms":[101],"\"imbalanced":[103],"data\",":[104],"\"selective":[105],"annotation\"":[106],"\"latent":[108],"annotation\".":[110]},"counts_by_year":[{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
