{"id":"https://openalex.org/W2890461267","doi":"https://doi.org/10.18653/v1/d18-1228","title":"Annotation of a Large Clinical Entity Corpus","display_name":"Annotation of a Large Clinical Entity Corpus","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2890461267","doi":"https://doi.org/10.18653/v1/d18-1228","mag":"2890461267"},"language":"en","primary_location":{"id":"doi:10.18653/v1/d18-1228","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d18-1228","pdf_url":"https://www.aclweb.org/anthology/D18-1228.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/D18-1228.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101230917","display_name":"Pinal Patel","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Pinal Patel","raw_affiliation_strings":["Team Lead, Research ezDI Inc. Kentucky"],"affiliations":[{"raw_affiliation_string":"Team Lead, Research ezDI Inc. Kentucky","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073356107","display_name":"Disha Davey","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Disha Davey","raw_affiliation_strings":["Medical Coding Analyst ezDI Inc. Kentucky"],"affiliations":[{"raw_affiliation_string":"Medical Coding Analyst ezDI Inc. Kentucky","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052731640","display_name":"Vishal Panchal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vishal Panchal","raw_affiliation_strings":["Research Engineer ezDI Inc. Kentucky"],"affiliations":[{"raw_affiliation_string":"Research Engineer ezDI Inc. Kentucky","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068786874","display_name":"Parth Pathak","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Parth Pathak","raw_affiliation_strings":["Data Scientist Microsoft"],"affiliations":[{"raw_affiliation_string":"Data Scientist Microsoft","institution_ids":["https://openalex.org/I4210164937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101230917"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8384,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.86066122,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"2033","last_page":"2042"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9447271823883057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8037316203117371},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.627524197101593},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.624813437461853},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6207035779953003},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6039696931838989},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5320820808410645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48648449778556824}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9447271823883057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8037316203117371},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.627524197101593},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.624813437461853},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6207035779953003},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6039696931838989},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5320820808410645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48648449778556824},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/d18-1228","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d18-1228","pdf_url":"https://www.aclweb.org/anthology/D18-1228.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/d18-1228","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/d18-1228","pdf_url":"https://www.aclweb.org/anthology/D18-1228.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2890461267.pdf","grobid_xml":"https://content.openalex.org/works/W2890461267.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1530032857","https://openalex.org/W1550258693","https://openalex.org/W1897351414","https://openalex.org/W1910861230","https://openalex.org/W1982059951","https://openalex.org/W2098921539","https://openalex.org/W2125726375","https://openalex.org/W2143902665","https://openalex.org/W2146089916","https://openalex.org/W2146974287","https://openalex.org/W2150944609","https://openalex.org/W2159985898","https://openalex.org/W2162311237","https://openalex.org/W2164947858","https://openalex.org/W2168041406","https://openalex.org/W2251868561","https://openalex.org/W2251929222","https://openalex.org/W2604748391","https://openalex.org/W2889193115","https://openalex.org/W2915128229","https://openalex.org/W2951299559"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"Having":[0],"an":[1,50,55],"entity":[2,120],"annotated":[3,52,63],"corpus":[4,53,122],"of":[5,11,17,31,46,84,123,167],"the":[6,12,29,35,47,90,107,162,165],"clinical":[7,18,92,125,130,133],"domain":[8,76,93],"is":[9],"one":[10],"basic":[13],"requirements":[14],"for":[15,156],"detection":[16],"entities":[19,134,168],"using":[20],"machine":[21],"learning":[22],"(ML)":[23],"approaches.":[24,38],"Past":[25],"researches":[26],"have":[27,103,150],"shown":[28],"superiority":[30],"statistical/ML":[32],"approaches":[33,114],"over":[34],"rule":[36],"based":[37],"But":[39],"in":[40,105,115],"order":[41],"to":[42],"take":[43],"full":[44],"advantage":[45],"ML":[48],"approaches,":[49],"accurately":[51],"becomes":[54],"essential":[56],"requirement.":[57],"Though":[58],"there":[59],"are":[60],"a":[61,68,74,85,117],"few":[62],"corpora":[64],"available":[65],"either":[66],"on":[67],"small":[69],"data":[70,87],"set,":[71],"or":[72],"covering":[73],"narrower":[75],"(like":[77],"cancer":[78],"patients":[79],"records,":[80],"lab":[81],"reports),":[82],"annotation":[83,108,110,159],"large":[86],"set":[88],"representing":[89],"entire":[91],"has":[94],"not":[95],"been":[96],"created":[97],"yet.":[98],"In":[99],"this":[100],"paper,":[101],"we":[102],"described":[104],"detail":[106],"guidelines,":[109],"process":[111],"and":[112,146],"our":[113],"creating":[116],"CER":[118],"(clinical":[119],"recognition)":[121],"5,160":[124],"documents":[126],"from":[127],"forty":[128],"different":[129],"specialities.":[131],"The":[132],"range":[135],"across":[136],"various":[137],"types":[138],"such":[139],"as":[140],"diseases,":[141],"procedures,":[142],"medications,":[143],"medical":[144],"devices":[145],"so":[147],"on.":[148],"We":[149],"classified":[151],"them":[152],"into":[153],"eleven":[154],"categories":[155],"annotation.":[157],"Our":[158],"also":[160],"reflects":[161],"relations":[163],"among":[164],"group":[166],"that":[169],"constitute":[170],"larger":[171],"concepts":[172],"altogether.":[173]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":8}],"updated_date":"2026-01-14T23:40:02.550235","created_date":"2025-10-10T00:00:00"}
