{"id":"https://openalex.org/W7166806979","doi":"https://doi.org/10.18653/v1/2026.acl-long.592","title":"Interleaved Tool-Call Reasoning for Protein Function Understanding","display_name":"Interleaved Tool-Call Reasoning for Protein Function Understanding","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7166806979","doi":"https://doi.org/10.18653/v1/2026.acl-long.592"},"language":null,"primary_location":{"id":"doi:10.18653/v1/2026.acl-long.592","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2026.acl-long.592","pdf_url":"https://aclanthology.org/2026.acl-long.592.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://aclanthology.org/2026.acl-long.592.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055471144","display_name":"Chuanliu Fan","orcid":"https://orcid.org/0000-0001-9958-9537"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuanliu Fan","raw_affiliation_strings":["School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139835530","display_name":"Zicheng Ma","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zicheng Ma","raw_affiliation_strings":["Changping Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changping Laboratory","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026009052","display_name":"Huanran Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanran Meng","raw_affiliation_strings":["School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031976409","display_name":"Aijia Zhang","orcid":"https://orcid.org/0000-0003-2260-3331"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aijia Zhang","raw_affiliation_strings":["School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139782920","display_name":"Wenjie Du","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125878","display_name":"Suzhou Research Institute","ror":"https://ror.org/03ebk0c60","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125878"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjie Du","raw_affiliation_strings":["Suzhou Institute for Advanced Research , USTC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute for Advanced Research , USTC","institution_ids":["https://openalex.org/I4210125878"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139834593","display_name":"Jun Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["Changping Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changping Laboratory","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139851846","display_name":"Ziqiang Cao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ziqiang Cao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5139777575","display_name":"Guohong Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohong Fu","raw_affiliation_strings":["Institute of Artificial Intelligence , Soochow University , Suzhou 215008 , Jiangsu , China","School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence , Soochow University , Suzhou 215008 , Jiangsu , China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology , Soochow University , Suzhou 215008 , Jiangsu , China","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.87143957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"12977","last_page":"12995"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6230999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6230999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1670999974012375,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13819999992847443,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.46889999508857727},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.3903000056743622},{"id":"https://openalex.org/keywords/automated-reasoning","display_name":"Automated reasoning","score":0.29660001397132874},{"id":"https://openalex.org/keywords/computational-linguistics","display_name":"Computational linguistics","score":0.2678000032901764},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.2621999979019165}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5544999837875366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49480000138282776},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46889999508857727},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.3903000056743622},{"id":"https://openalex.org/C195344581","wikidata":"https://www.wikidata.org/wiki/Q2555318","display_name":"Automated reasoning","level":2,"score":0.29660001397132874},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.29170000553131104},{"id":"https://openalex.org/C155092808","wikidata":"https://www.wikidata.org/wiki/Q182557","display_name":"Computational linguistics","level":2,"score":0.2678000032901764},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.2621999979019165},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.2554999887943268},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.25380000472068787},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.25130000710487366}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/2026.acl-long.592","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2026.acl-long.592","pdf_url":"https://aclanthology.org/2026.acl-long.592.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/2026.acl-long.592","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2026.acl-long.592","pdf_url":"https://aclanthology.org/2026.acl-long.592.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6933236122131348,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1502338116","display_name":null,"funder_award_id":"62476187","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327518","display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7166806979.pdf","grobid_xml":"https://content.openalex.org/works/W7166806979.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Chuanliu":[0],"Fan,":[1],"Zicheng":[2],"Ma,":[3],"Huanran":[4],"Meng,":[5],"Aijia":[6],"Zhang,":[7,11],"Wenjie":[8],"Du,":[9],"Jun":[10],"Ziqiang":[12],"Cao,":[13],"Guohong":[14],"Fu.":[15],"Proceedings":[16],"of":[17,22],"the":[18,23],"64th":[19],"Annual":[20],"Meeting":[21],"Association":[24],"for":[25],"Computational":[26],"Linguistics":[27],"(Volume":[28],"1:":[29],"Long":[30],"Papers).":[31],"2026.":[32]},"counts_by_year":[],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2026-07-02T00:00:00"}
