{"id":"https://openalex.org/W4412886921","doi":"https://doi.org/10.18653/v1/2025.acl-long.26","title":"A Survey on Foundation Language Models for Single-cell Biology","display_name":"A Survey on Foundation Language Models for Single-cell Biology","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4412886921","doi":"https://doi.org/10.18653/v1/2025.acl-long.26"},"language":"en","primary_location":{"id":"doi:10.18653/v1/2025.acl-long.26","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2025.acl-long.26","pdf_url":"https://aclanthology.org/2025.acl-long.26.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://aclanthology.org/2025.acl-long.26.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100403400","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0001-7886-6144"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100353590","display_name":"Hao Chen","orcid":"https://orcid.org/0000-0002-7886-7822"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hao Chen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102856192","display_name":"Zhihong Zhu","orcid":"https://orcid.org/0009-0001-4530-5516"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhihong Zhu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103228004","display_name":"Ziheng Zhang","orcid":"https://orcid.org/0000-0003-2968-7304"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ziheng Zhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079618579","display_name":"Zhenxi Lin","orcid":"https://orcid.org/0000-0003-1264-6549"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhenxi Lin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052483692","display_name":"Ziyue Qiao","orcid":"https://orcid.org/0000-0002-9485-4861"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ziyue Qiao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051649145","display_name":"Yefeng Zheng","orcid":"https://orcid.org/0000-0003-2195-2847"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yefeng Zheng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100352418","display_name":"Xian Wu","orcid":"https://orcid.org/0000-0003-1118-9710"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xian Wu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"528","last_page":"549"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.6942999958992004,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.6942999958992004,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.778803288936615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.567253589630127},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3714140057563782},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.16209211945533752},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.11324408650398254}],"concepts":[{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.778803288936615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.567253589630127},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3714140057563782},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.16209211945533752},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.11324408650398254}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.18653/v1/2025.acl-long.26","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2025.acl-long.26","pdf_url":"https://aclanthology.org/2025.acl-long.26.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-167053","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-167053","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference paper"}],"best_oa_location":{"id":"doi:10.18653/v1/2025.acl-long.26","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2025.acl-long.26","pdf_url":"https://aclanthology.org/2025.acl-long.26.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412886921.pdf","grobid_xml":"https://content.openalex.org/works/W4412886921.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2381393187","https://openalex.org/W2332779545","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W2358060160","https://openalex.org/W2035483685"],"abstract_inverted_index":{"Fan":[0],"Zhang,":[1,7],"Hao":[2],"Chen,":[3],"Zhihong":[4],"Zhu,":[5],"Ziheng":[6],"Zhenxi":[8],"Lin,":[9],"Ziyue":[10],"Qiao,":[11],"Yefeng":[12],"Zheng,":[13],"Xian":[14],"Wu.":[15],"Proceedings":[16],"of":[17,22],"the":[18,23],"63rd":[19],"Annual":[20],"Meeting":[21],"Association":[24],"for":[25],"Computational":[26],"Linguistics":[27],"(Volume":[28],"1:":[29],"Long":[30],"Papers).":[31],"2025.":[32]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
