{"id":"https://openalex.org/W3101381894","doi":"https://doi.org/10.18653/v1/2020.wnut-1.40","title":"BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models","display_name":"BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3101381894","doi":"https://doi.org/10.18653/v1/2020.wnut-1.40","mag":"3101381894"},"language":"en","primary_location":{"id":"doi:10.18653/v1/2020.wnut-1.40","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2020.wnut-1.40","pdf_url":"https://www.aclweb.org/anthology/2020.wnut-1.40.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.aclweb.org/anthology/2020.wnut-1.40.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083967421","display_name":"Julien Knafou","orcid":"https://orcid.org/0000-0002-9086-4982"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Julien Knafou","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Geneva, Switzerland","University of Applied Sciences and Arts of Western Switzerland","University of Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"University of Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069421871","display_name":"Nona Naderi","orcid":"https://orcid.org/0000-0002-1272-7640"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nona Naderi","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Geneva, Switzerland","University of Applied Sciences and Arts of Western Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056816934","display_name":"Jenny Copara","orcid":"https://orcid.org/0000-0002-1510-3331"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jenny Copara","raw_affiliation_strings":["University of Applied Sciences and Arts of Western Switzerland","Swiss Institute of Bioinformatics, Geneva, Switzerland","University of Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042070839","display_name":"Douglas Teodoro","orcid":"https://orcid.org/0000-0001-6238-4503"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Douglas Teodoro","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Geneva, Switzerland","University of Applied Sciences and Arts of Western Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Geneva, Switzerland","University of Applied Sciences and Arts of Western Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Applied Sciences and Arts of Western Switzerland","institution_ids":["https://openalex.org/I173439891"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083967421"],"corresponding_institution_ids":["https://openalex.org/I114457229","https://openalex.org/I12708293","https://openalex.org/I173439891"],"apc_list":null,"apc_paid":null,"fwci":2.3001,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.90879781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"305","last_page":"313"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8322768211364746},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.7390792369842529},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6982508897781372},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6700654029846191},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5998168587684631},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5700955390930176},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.46350640058517456},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4251532554626465},{"id":"https://openalex.org/keywords/machine-translation","display_name":"Machine translation","score":0.4108765721321106},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0605999231338501}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8322768211364746},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.7390792369842529},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6982508897781372},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6700654029846191},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5998168587684631},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5700955390930176},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.46350640058517456},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4251532554626465},{"id":"https://openalex.org/C203005215","wikidata":"https://www.wikidata.org/wiki/Q79798","display_name":"Machine translation","level":2,"score":0.4108765721321106},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0605999231338501},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.18653/v1/2020.wnut-1.40","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2020.wnut-1.40","pdf_url":"https://www.aclweb.org/anthology/2020.wnut-1.40.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020)","raw_type":"proceedings-article"},{"id":"pmh:oai:unige.ch:aou:unige:159575","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:159575","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2020 EMNLP Workshop W-NUT: The Sixth Workshop on Noisy User-generated Text (2020)\\n           p. 305-313","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:oai:arodes.hes-so.ch:6834","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/6834","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/6834","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.18653/v1/2020.wnut-1.40","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2020.wnut-1.40","pdf_url":"https://www.aclweb.org/anthology/2020.wnut-1.40.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.8899999856948853,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3101381894.pdf","grobid_xml":"https://content.openalex.org/works/W3101381894.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W2296283641","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2925863688","https://openalex.org/W2962798796","https://openalex.org/W2963341956","https://openalex.org/W2963403868","https://openalex.org/W2963716420","https://openalex.org/W2964121744","https://openalex.org/W2964242047","https://openalex.org/W2965373594","https://openalex.org/W2970597249","https://openalex.org/W2970771982","https://openalex.org/W3005700362","https://openalex.org/W3034238904","https://openalex.org/W3044739286","https://openalex.org/W3046375318","https://openalex.org/W3102400851","https://openalex.org/W3114551148","https://openalex.org/W4287705547","https://openalex.org/W4287867774","https://openalex.org/W4385245566"],"related_works":["https://openalex.org/W3011059803","https://openalex.org/W2775554247","https://openalex.org/W2110168585","https://openalex.org/W3107474891","https://openalex.org/W2250213760","https://openalex.org/W4386247111","https://openalex.org/W4327642362","https://openalex.org/W2587014613","https://openalex.org/W2794347674","https://openalex.org/W3098003361"],"abstract_inverted_index":{"Recent":[0],"improvements":[1],"in":[2,77],"machine-reading":[3],"technologies":[4],"attracted":[5],"much":[6],"attention":[7],"to":[8,97],"automation":[9],"problems":[10],"and":[11],"their":[12],"possibilities.":[13],"In":[14,31],"this":[15,32,68],"context,":[16],"WNUT":[17],"2020":[18],"introduces":[19],"a":[20,36,82,114],"Name":[21],"Entity":[22],"Recognition":[23],"(NER)":[24],"task":[25],"based":[26,39,80],"on":[27,40,81],"wet":[28],"laboratory":[29],"procedures.":[30],"paper,":[33],"we":[34],"present":[35],"3-step":[37],"method":[38],"deep":[41],"neural":[42],"language":[43,66],"models":[44,76,94,111],"that":[45,103],"reported":[46],"the":[47,57,71,99,105],"best":[48],"overall":[49],"exact":[50],"match":[51],"F":[52],"1":[53],"-score":[54],"(77.99%)":[55],"of":[56,73,84,89,101,107],"competition.":[58],"By":[59],"fine-tuning":[60,113],"10":[61,63],"times,":[62],"different":[64,93],"pretrained":[65,110,115],"models,":[67],"work":[69],"shows":[70],"advantage":[72],"having":[74,91,108],"more":[75],"an":[78],"ensemble":[79,102],"majority":[83],"votes":[85],"strategy.":[86],"On":[87],"top":[88],"that,":[90],"100":[92],"allowed":[95],"us":[96],"analyse":[98],"combinations":[100],"demonstrated":[104],"impact":[106],"multiple":[109,117],"versus":[112],"model":[116],"times.":[118]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
