{"id":"https://openalex.org/W3107957306","doi":"https://doi.org/10.18653/v1/2020.nlpcovid19-2.20","title":"COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities","display_name":"COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3107957306","doi":"https://doi.org/10.18653/v1/2020.nlpcovid19-2.20","mag":"3107957306"},"language":"en","primary_location":{"id":"doi:10.18653/v1/2020.nlpcovid19-2.20","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2020.nlpcovid19-2.20","pdf_url":"https://aclanthology.org/2020.nlpcovid19-2.20.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st Workshop on NLP for COVID-19 (Part 2) at EMNLP 2020","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://aclanthology.org/2020.nlpcovid19-2.20.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Marcia Afonso Barros","orcid":null},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Marcia Afonso Barros","raw_affiliation_strings":["CENTRA, Faculdade de Cincias, Universidade de Lisboa","LASIGE, Faculdade de Cincias, Universidade de Lisboa","LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa","CENTRA, Faculdade de Ci\u00eancias, Universidade de Lisboa"],"affiliations":[{"raw_affiliation_string":"CENTRA, Faculdade de Cincias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Cincias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"CENTRA, Faculdade de Ci\u00eancias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024583659","display_name":"Andr\u00e9 Lam\u00farias","orcid":"https://orcid.org/0000-0001-7965-6536"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Andre Lamurias","raw_affiliation_strings":["LASIGE, Faculdade de Cincias, Universidade de Lisboa","LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa"],"affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Cincias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075883524","display_name":"Diana Sousa","orcid":"https://orcid.org/0000-0003-0597-9273"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Diana Sousa","raw_affiliation_strings":["LASIGE, Faculdade de Cincias, Universidade de Lisboa","LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa"],"affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Cincias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081030878","display_name":"Pedro Ruas","orcid":"https://orcid.org/0000-0002-1293-4199"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro Ruas","raw_affiliation_strings":["LASIGE, Faculdade de Cincias, Universidade de Lisboa","LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa"],"affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Cincias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014333753","display_name":"Francisco M. Couto","orcid":"https://orcid.org/0000-0003-0627-1496"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Francisco M. Couto","raw_affiliation_strings":["LASIGE, Faculdade de Cincias, Universidade de Lisboa","LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa"],"affiliations":[{"raw_affiliation_string":"LASIGE, Faculdade de Cincias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I141596103"],"apc_list":null,"apc_paid":null,"fwci":1.1131,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.85017034,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10203","display_name":"Recommender Systems and Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10203","display_name":"Recommender Systems and Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8251435160636902},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.8025736808776855},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6968756914138794},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.573367714881897},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5139026641845703},{"id":"https://openalex.org/keywords/recommender-system","display_name":"Recommender system","score":0.47276952862739563},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44454875588417053},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.4261504113674164},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38106662034988403}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8251435160636902},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.8025736808776855},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6968756914138794},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.573367714881897},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5139026641845703},{"id":"https://openalex.org/C557471498","wikidata":"https://www.wikidata.org/wiki/Q554950","display_name":"Recommender system","level":2,"score":0.47276952862739563},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44454875588417053},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.4261504113674164},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38106662034988403},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18653/v1/2020.nlpcovid19-2.20","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2020.nlpcovid19-2.20","pdf_url":"https://aclanthology.org/2020.nlpcovid19-2.20.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st Workshop on NLP for COVID-19 (Part 2) at EMNLP 2020","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18653/v1/2020.nlpcovid19-2.20","is_oa":true,"landing_page_url":"https://doi.org/10.18653/v1/2020.nlpcovid19-2.20","pdf_url":"https://aclanthology.org/2020.nlpcovid19-2.20.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 1st Workshop on NLP for COVID-19 (Part 2) at EMNLP 2020","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2089664753","display_name":null,"funder_award_id":"UIDB/00408/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3272457656","display_name":null,"funder_award_id":"UIDB/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3284537356","display_name":null,"funder_award_id":"SFRH/B","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4384961418","display_name":null,"funder_award_id":"PTDC/CCI-BIO/28685/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5369178244","display_name":null,"funder_award_id":"UIDB/00099/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5818630289","display_name":null,"funder_award_id":"SFRH/BD/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6299983296","display_name":null,"funder_award_id":"PTDC/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7198739527","display_name":null,"funder_award_id":"SFRH/BD/128840/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G724804869","display_name":null,"funder_award_id":"SFRH/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3107957306.pdf","grobid_xml":"https://content.openalex.org/works/W3107957306.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1966976587","https://openalex.org/W2101409192","https://openalex.org/W2108630796","https://openalex.org/W2164777277","https://openalex.org/W2170189740","https://openalex.org/W2200988052","https://openalex.org/W2346452181","https://openalex.org/W2767470330","https://openalex.org/W2889045382","https://openalex.org/W2903305690","https://openalex.org/W2993018468","https://openalex.org/W3002371813","https://openalex.org/W3013647094","https://openalex.org/W3015259591","https://openalex.org/W3016503181","https://openalex.org/W3019306262","https://openalex.org/W3020152921","https://openalex.org/W3020786614","https://openalex.org/W3024784974","https://openalex.org/W3098749216","https://openalex.org/W3103592567","https://openalex.org/W4294214983"],"related_works":["https://openalex.org/W4390273403","https://openalex.org/W4386781444","https://openalex.org/W4246980185","https://openalex.org/W2150182025","https://openalex.org/W3092950680","https://openalex.org/W3197542405","https://openalex.org/W3125580266","https://openalex.org/W44246808","https://openalex.org/W4317039510","https://openalex.org/W4238861846"],"abstract_inverted_index":{"With":[0],"the":[1,67,80,86,95,102,115,122,130,138,142,150,157],"increasing":[2],"number":[3],"of":[4,58,144,152,169],"publications":[5],"about":[6],"COVID-19,":[7],"it":[8],"is":[9,71],"a":[10,25,41,56],"challenge":[11],"to":[12,23,33,94,135],"extract":[13],"personalized":[14],"knowledge":[15],"suitable":[16],"for":[17,29,63,88,117,119,132,137],"each":[18],"researcher.":[19],"This":[20],"work":[21],"aims":[22],"build":[24],"new":[26,153],"semantic-based":[27],"pipeline":[28,42],"recommending":[30],"biomedical":[31],"entities":[32,146],"scientific":[34],"researchers.":[35],"To":[36],"this":[37],"end,":[38],"we":[39,83],"developed":[40],"that":[43,72,110,164],"creates":[44],"an":[45],"implicit":[46],"feedback":[47],"matrix":[48],"based":[49],"on":[50,55],"Named":[51],"Entity":[52],"Recognition":[53],"(NER)":[54],"corpus":[57],"documents,":[59],"using":[60,74,101,112,126],"multidisciplinary":[61],"ontologies":[62,75],"recognizing":[64],"and":[65],"linking":[66],"entities.":[68],"Our":[69],"hypothesis":[70],"by":[73],"from":[76,163],"different":[77],"fields":[78],"in":[79,149,166],"NER":[81],"phase,":[82],"can":[84],"improve":[85],"results":[87,116,131],"state-of-the-art":[89],"collaborative-filtering":[90],"recommender":[91],"systems":[92],"applied":[93],"dataset":[96,108],"created.":[97],"The":[98],"tests":[99],"performed":[100],"COVID-19":[103],"Open":[104],"Research":[105],"Dataset":[106],"(CORD-19)":[107],"show":[109],"when":[111,125],"four":[113],"ontologies,":[114],"precision@k,":[118],"example,":[120],"reach":[121],"80%,":[123],"whereas":[124],"only":[127],"one":[128],"ontology,":[129],"precision@k":[133],"drops":[134],"20%,":[136],"same":[139],"users.":[140],"Furthermore,":[141],"use":[143],"multi-fields":[145],"may":[147],"help":[148],"discovery":[151],"items,":[154],"even":[155],"if":[156],"researchers":[158],"do":[159],"not":[160],"have":[161],"items":[162],"field":[165],"their":[167],"set":[168],"preferences.":[170]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
