{"id":"https://openalex.org/W3163742664","doi":"https://doi.org/10.18453/rosdok_id00001444","title":"Functional characterization and annotation of trait-associated genomic regions by transcriptome analysis","display_name":"Functional characterization and annotation of trait-associated genomic regions by transcriptome analysis","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W3163742664","doi":"https://doi.org/10.18453/rosdok_id00001444","mag":"3163742664"},"language":"en","primary_location":{"id":"pmh:oai:oai.rosdok.uni-rostock.de:rosdok_disshab_0000001265","is_oa":true,"landing_page_url":"https://rosdok.uni-rostock.de/resolve/id/rosdok_disshab_0000001265","pdf_url":null,"source":{"id":"https://openalex.org/S4306400038","display_name":"Ros Dok Rostocker Dokumentenserver (Universit\u00e4tsbibliothek Rostock)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4665924","host_organization_name":"University of Rostock","host_organization_lineage":["https://openalex.org/I4665924"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\\n        doctoral thesis\\n      "},"type":"dissertation","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://rosdok.uni-rostock.de/resolve/id/rosdok_disshab_0000001265","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011136999","display_name":"Yang Du","orcid":"https://orcid.org/0000-0002-5707-513X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Du, Yang","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5011136999"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28990957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5621083974838257},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5563626289367676},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.5438485741615295},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5348523855209351},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4270550608634949},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42223986983299255},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28788667917251587},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2612278461456299},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1804487109184265},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11883440613746643},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08678212761878967}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5621083974838257},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5563626289367676},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.5438485741615295},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5348523855209351},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4270550608634949},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42223986983299255},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28788667917251587},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2612278461456299},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1804487109184265},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11883440613746643},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08678212761878967}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:oai.rosdok.uni-rostock.de:rosdok_disshab_0000001265","is_oa":true,"landing_page_url":"https://rosdok.uni-rostock.de/resolve/id/rosdok_disshab_0000001265","pdf_url":null,"source":{"id":"https://openalex.org/S4306400038","display_name":"Ros Dok Rostocker Dokumentenserver (Universit\u00e4tsbibliothek Rostock)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4665924","host_organization_name":"University of Rostock","host_organization_lineage":["https://openalex.org/I4665924"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\\n        doctoral thesis\\n      "},{"id":"doi:10.18453/rosdok_id00001444","is_oa":true,"landing_page_url":"https://doi.org/10.18453/rosdok_id00001444","pdf_url":null,"source":{"id":"https://openalex.org/S7407052990","display_name":"RosDok","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:oai.rosdok.uni-rostock.de:rosdok_disshab_0000001265","is_oa":true,"landing_page_url":"https://rosdok.uni-rostock.de/resolve/id/rosdok_disshab_0000001265","pdf_url":null,"source":{"id":"https://openalex.org/S4306400038","display_name":"Ros Dok Rostocker Dokumentenserver (Universit\u00e4tsbibliothek Rostock)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4665924","host_organization_name":"University of Rostock","host_organization_lineage":["https://openalex.org/I4665924"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\\n        doctoral thesis\\n      "},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":148,"referenced_works":["https://openalex.org/W130014499","https://openalex.org/W1481143593","https://openalex.org/W1484347389","https://openalex.org/W1538704317","https://openalex.org/W1544691147","https://openalex.org/W1559899545","https://openalex.org/W1643056575","https://openalex.org/W1758266623","https://openalex.org/W1821797507","https://openalex.org/W1920303762","https://openalex.org/W1965843937","https://openalex.org/W1969596239","https://openalex.org/W1970156673","https://openalex.org/W1970663985","https://openalex.org/W1973394902","https://openalex.org/W1978677326","https://openalex.org/W1981509058","https://openalex.org/W1985403607","https://openalex.org/W1988753748","https://openalex.org/W1989568035","https://openalex.org/W1989844119","https://openalex.org/W1994412657","https://openalex.org/W1996942642","https://openalex.org/W2007321142","https://openalex.org/W2009570821","https://openalex.org/W2012363927","https://openalex.org/W2014704298","https://openalex.org/W2016202595","https://openalex.org/W2018363492","https://openalex.org/W2019712287","https://openalex.org/W2021751029","https://openalex.org/W2026283092","https://openalex.org/W2027200859","https://openalex.org/W2032019813","https://openalex.org/W2034226898","https://openalex.org/W2034591381","https://openalex.org/W2036634503","https://openalex.org/W2040659174","https://openalex.org/W2043321087","https://openalex.org/W2046137036","https://openalex.org/W2046241907","https://openalex.org/W2050712839","https://openalex.org/W2052822518","https://openalex.org/W2053616835","https://openalex.org/W2055043387","https://openalex.org/W2056375209","https://openalex.org/W2058065669","https://openalex.org/W2060444097","https://openalex.org/W2061680337","https://openalex.org/W2062809474","https://openalex.org/W2063903553","https://openalex.org/W2065751798","https://openalex.org/W2066400360","https://openalex.org/W2066721762","https://openalex.org/W2069062868","https://openalex.org/W2070342831","https://openalex.org/W2074471441","https://openalex.org/W2075168304","https://openalex.org/W2076618452","https://openalex.org/W2079588819","https://openalex.org/W2081098333","https://openalex.org/W2087048695","https://openalex.org/W2091442045","https://openalex.org/W2096412974","https://openalex.org/W2097065948","https://openalex.org/W2097139904","https://openalex.org/W2097383747","https://openalex.org/W2097679787","https://openalex.org/W2099533874","https://openalex.org/W2100658004","https://openalex.org/W2100725331","https://openalex.org/W2105805010","https://openalex.org/W2106554405","https://openalex.org/W2107277218","https://openalex.org/W2107665951","https://openalex.org/W2108289350","https://openalex.org/W2110065044","https://openalex.org/W2110344204","https://openalex.org/W2111933532","https://openalex.org/W2114104545","https://openalex.org/W2116113455","https://openalex.org/W2119554316","https://openalex.org/W2122598723","https://openalex.org/W2122732537","https://openalex.org/W2123724865","https://openalex.org/W2124866579","https://openalex.org/W2125114453","https://openalex.org/W2125882871","https://openalex.org/W2126602684","https://openalex.org/W2128114769","https://openalex.org/W2130494035","https://openalex.org/W2131478115","https://openalex.org/W2131761131","https://openalex.org/W2132630686","https://openalex.org/W2133036743","https://openalex.org/W2133174470","https://openalex.org/W2133583181","https://openalex.org/W2134587001","https://openalex.org/W2134597218","https://openalex.org/W2134672574","https://openalex.org/W2135458301","https://openalex.org/W2135995702","https://openalex.org/W2136145671","https://openalex.org/W2136723735","https://openalex.org/W2136796229","https://openalex.org/W2138255346","https://openalex.org/W2138664009","https://openalex.org/W2139976307","https://openalex.org/W2140022443","https://openalex.org/W2142452151","https://openalex.org/W2142613131","https://openalex.org/W2147727120","https://openalex.org/W2148237482","https://openalex.org/W2148521032","https://openalex.org/W2149681218","https://openalex.org/W2151922790","https://openalex.org/W2152239989","https://openalex.org/W2153893253","https://openalex.org/W2154487835","https://openalex.org/W2156124720","https://openalex.org/W2156452836","https://openalex.org/W2156875971","https://openalex.org/W2156922349","https://openalex.org/W2157750191","https://openalex.org/W2158322625","https://openalex.org/W2158874082","https://openalex.org/W2160697532","https://openalex.org/W2161488606","https://openalex.org/W2162212014","https://openalex.org/W2162530578","https://openalex.org/W2162691613","https://openalex.org/W2163022769","https://openalex.org/W2163809592","https://openalex.org/W2163929346","https://openalex.org/W2165748644","https://openalex.org/W2166187656","https://openalex.org/W2168730720","https://openalex.org/W2170989872","https://openalex.org/W2171808845","https://openalex.org/W2172068419","https://openalex.org/W2172205306","https://openalex.org/W2247766769","https://openalex.org/W2259271558","https://openalex.org/W2259938310","https://openalex.org/W2482833590","https://openalex.org/W2605068739","https://openalex.org/W2999729612","https://openalex.org/W3102508024"],"related_works":["https://openalex.org/W2071850410","https://openalex.org/W2416993504","https://openalex.org/W2517692616","https://openalex.org/W2054854698","https://openalex.org/W2035486209","https://openalex.org/W2005963332","https://openalex.org/W2133096997","https://openalex.org/W3189009738","https://openalex.org/W2147013674","https://openalex.org/W3128867478","https://openalex.org/W2134415934","https://openalex.org/W2039760291","https://openalex.org/W1802211083","https://openalex.org/W2147098034","https://openalex.org/W2592753580","https://openalex.org/W2157593856","https://openalex.org/W2095321471","https://openalex.org/W2795051895","https://openalex.org/W3165519561","https://openalex.org/W3121342931"],"abstract_inverted_index":{"In":[0],"this":[1],"work,":[2],"two":[3],"novel":[4,55],"implementations":[5],"have":[6],"been":[7,36],"presented,":[8],"which":[9,38,68],"could":[10,39],"assist":[11],"in":[12,42,77],"the":[13,31,43,65],"design":[14,44],"and":[15,24,48],"data":[16,76],"analysis":[17],"of":[18,45,50,81],"high-throughput":[19],"genomic":[20,75],"experiments.":[21],"An":[22],"efficient":[23],"flexible":[25],"tiling":[26,52],"probe":[27],"selection":[28],"pipeline":[29],"utilizing":[30],"penalized":[32],"uniqueness":[33],"score":[34],"has":[35],"implemented,":[37],"be":[40],"employed":[41],"various":[46],"types":[47],"scales":[49],"genome":[51],"task.":[53],"A":[54],"hidden":[56],"semi-Markov":[57],"model":[58],"(HSMM)":[59],"implementation":[60],"is":[61],"made":[62],"available":[63],"within":[64],"Bioconductor":[66],"project,":[67],"provides":[69],"a":[70,78],"unified":[71],"interface":[72],"for":[73],"segmenting":[74],"wide":[79],"range":[80],"research":[82],"subjects.":[83]},"counts_by_year":[],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2025-10-10T00:00:00"}
