{"id":"https://openalex.org/W4254610871","doi":"https://doi.org/10.18293/dmsviva21-013","title":"Gene Ontology Terms Visualization with Dynamic Distance-Graph and Similarity Measures (S)","display_name":"Gene Ontology Terms Visualization with Dynamic Distance-Graph and Similarity Measures (S)","publication_year":2021,"publication_date":"2021-06-30","ids":{"openalex":"https://openalex.org/W4254610871","doi":"https://doi.org/10.18293/dmsviva21-013"},"language":"en","primary_location":{"id":"doi:10.18293/dmsviva21-013","is_oa":true,"landing_page_url":"https://doi.org/10.18293/dmsviva21-013","pdf_url":"https://doi.org/10.18293/dmsviva21-013","source":{"id":"https://openalex.org/S4386872205","display_name":"Proceedings","issn_l":"2326-3261","issn":["2326-3261"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conferences on Distributed Multimedia Systems","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://doi.org/10.18293/dmsviva21-013","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Alessia Auriemma","orcid":null},"institutions":[{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alessia Auriemma","raw_affiliation_strings":["Department of Computer Science University of Salerno 84084 Fisciano (SA), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science University of Salerno 84084 Fisciano (SA), Italy","institution_ids":["https://openalex.org/I131729948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I131729948"],"apc_list":null,"apc_paid":null,"fwci":1.8795,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87024063,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2021","issue":null,"first_page":"85","last_page":"91"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7872128486633301},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6713767051696777},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6654693484306335},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5882664918899536},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5051429867744446},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.47907835245132446},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4691088795661926},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.45378774404525757},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4460999667644501},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.4345894753932953},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.4261205494403839},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.42571598291397095},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42265915870666504},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4174998998641968},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41395437717437744},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23937195539474487},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23510634899139404},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16787481307983398},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.16736507415771484},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11853623390197754},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11833253502845764}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7872128486633301},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6713767051696777},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6654693484306335},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5882664918899536},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5051429867744446},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.47907835245132446},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4691088795661926},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.45378774404525757},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4460999667644501},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.4345894753932953},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.4261205494403839},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.42571598291397095},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42265915870666504},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4174998998641968},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41395437717437744},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23937195539474487},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23510634899139404},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16787481307983398},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.16736507415771484},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11853623390197754},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11833253502845764},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18293/dmsviva21-013","is_oa":true,"landing_page_url":"https://doi.org/10.18293/dmsviva21-013","pdf_url":"https://doi.org/10.18293/dmsviva21-013","source":{"id":"https://openalex.org/S4386872205","display_name":"Proceedings","issn_l":"2326-3261","issn":["2326-3261"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conferences on Distributed Multimedia Systems","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.18293/dmsviva21-013","is_oa":true,"landing_page_url":"https://doi.org/10.18293/dmsviva21-013","pdf_url":"https://doi.org/10.18293/dmsviva21-013","source":{"id":"https://openalex.org/S4386872205","display_name":"Proceedings","issn_l":"2326-3261","issn":["2326-3261"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conferences on Distributed Multimedia Systems","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4254610871.pdf","grobid_xml":"https://content.openalex.org/works/W4254610871.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1968525395","https://openalex.org/W2028695285","https://openalex.org/W2038963685","https://openalex.org/W2041025542","https://openalex.org/W2051218719","https://openalex.org/W2063779797","https://openalex.org/W2100761975","https://openalex.org/W2126999247","https://openalex.org/W2127218421","https://openalex.org/W2128049108","https://openalex.org/W2164154943","https://openalex.org/W2168316093","https://openalex.org/W2537623931","https://openalex.org/W2598585991","https://openalex.org/W2615147949","https://openalex.org/W2733047156","https://openalex.org/W2739999456","https://openalex.org/W2776229910","https://openalex.org/W2895496841","https://openalex.org/W2953328382","https://openalex.org/W2991893427","https://openalex.org/W3114604754","https://openalex.org/W4288018061","https://openalex.org/W6678865120","https://openalex.org/W6685051220","https://openalex.org/W6808768358","https://openalex.org/W7073685941"],"related_works":["https://openalex.org/W2109940557","https://openalex.org/W2466832359","https://openalex.org/W4391210591","https://openalex.org/W1582019636","https://openalex.org/W1499005795","https://openalex.org/W3172493050","https://openalex.org/W2546850185","https://openalex.org/W2360108448","https://openalex.org/W1484449898","https://openalex.org/W2889493020"],"abstract_inverted_index":{"In":[0,55,142],"the":[1,39,43,48,69,72,94,110,127,133,137,154,159,173,194,197],"biological":[2],"field,":[3],"having":[4],"a":[5,18,22,60,118,148,178],"visual":[6],"and":[7,53,79,84,96,113,120,172],"interactive":[8,121,134],"representation":[9],"of":[10,25,71,103,129,136,162,175,196],"data":[11,66,90,108],"is":[12,17,29,185],"useful,":[13],"particularly":[14],"when":[15],"there":[16],"need":[19],"to":[20,31,41,63,152,167,191],"investigate":[21],"large":[23],"amount":[24],"multilevel":[26,179],"data.":[27],"It":[28],"advantageous":[30],"communicate":[32],"this":[33,56,143],"knowledge":[34,195],"intuitively":[35],"because":[36],"it":[37],"helps":[38],"users":[40],"see":[42],"dynamic":[44,119],"structure":[45],"in":[46,132,189],"which":[47,184],"correct":[49],"connections":[50],"are":[51],"interacting":[52],"extrapolated.":[54],"work,":[57],"we":[58,115,145],"propose":[59],"human-interaction":[61],"system":[62],"view":[64,122,171],"similarity":[65,89],"based":[67,123],"on":[68,124],"functions":[70],"Gene":[73,163],"Ontology":[74],"(Cellular":[75],"Component,":[76],"Molecular":[77],"Function,":[78],"Biological":[80],"Process)":[81],"for":[82,99],"Alzheimer's":[83],"Parkinson's":[85],"disease":[86],"proteins/genes.":[87],"The":[88],"was":[91],"built":[92],"with":[93,109,126,181],"Lin":[95],"Wang":[97],"measures":[98],"all":[100],"three":[101,160],"areas":[102],"gene":[104],"ontology.":[105],"We":[106],"clustered":[107],"K-means":[111],"algorithm":[112],"then":[114],"have":[116,146],"suggested":[117],"SigmaJS":[125],"aim":[128],"allowing":[130],"customization":[131],"mode":[135],"analysis":[138,180],"workflow":[139],"by":[140],"users.":[141],"way":[144],"obtained":[147],"more":[149,182,187],"immediate":[150],"visualization":[151],"capture":[153],"most":[155],"relevant":[156],"information":[157],"within":[158],"vocabularies":[161],"Ontology.":[164],"This":[165],"facilitates":[166],"obtain":[168],"an":[169],"omic":[170],"possibility":[174],"carrying":[176],"out":[177],"details":[183],"much":[186],"useful":[188],"order":[190],"better":[192],"understand":[193],"end":[198],"user.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
