{"id":"https://openalex.org/W2050520109","doi":"https://doi.org/10.1631/jzus.c1000091","title":"Structural visualization of sequential DNA data","display_name":"Structural visualization of sequential DNA data","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2050520109","doi":"https://doi.org/10.1631/jzus.c1000091","mag":"2050520109"},"language":"en","primary_location":{"id":"doi:10.1631/jzus.c1000091","is_oa":false,"landing_page_url":"https://doi.org/10.1631/jzus.c1000091","pdf_url":null,"source":{"id":"https://openalex.org/S199067057","display_name":"Journal of Zhejiang University SCIENCE C","issn_l":"1869-1951","issn":["1869-1951","1869-196X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311937","host_organization_name":"Zhejiang University Press","host_organization_lineage":["https://openalex.org/P4310311937"],"host_organization_lineage_names":["Zhejiang University Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Zhejiang University SCIENCE C","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108474852","display_name":"Xiaohong Mao","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao-hong Mao","raw_affiliation_strings":["The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, 310013, China","Zhejiang, University"],"affiliations":[{"raw_affiliation_string":"The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, 310013, China","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Zhejiang, University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113595275","display_name":"Jinghua Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing-hua Fu","raw_affiliation_strings":["State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310058, China","Zhejiang, University"],"affiliations":[{"raw_affiliation_string":"State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang, University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344463","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0002-6857-7696"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Chen","raw_affiliation_strings":["State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310058, China","Zhejiang, University"],"affiliations":[{"raw_affiliation_string":"State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang, University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101538499","display_name":"Qian You","orcid":"https://orcid.org/0000-0003-1034-036X"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian You","raw_affiliation_strings":["Department of Computer and Information Science, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, IN, 46202, USA","Indiana University-Purdue University\u2013Indianapolis (IUPUI)"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University-Purdue University\u2013Indianapolis (IUPUI)","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004575115","display_name":"Shiaofen Fang","orcid":"https://orcid.org/0000-0001-8277-5202"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiao-fen Fang","raw_affiliation_strings":["Department of Computer and Information Science, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, IN, 46202, USA","Indiana University-Purdue University\u2013Indianapolis (IUPUI)"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, Indiana University-Purdue University Indianapolis (IUPUI), Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University-Purdue University\u2013Indianapolis (IUPUI)","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108580059","display_name":"Qunsheng Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qun-sheng Peng","raw_affiliation_strings":["State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310058, China","Zhejiang, University"],"affiliations":[{"raw_affiliation_string":"State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Zhejiang, University","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5108474852"],"corresponding_institution_ids":["https://openalex.org/I4210158318","https://openalex.org/I76130692"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0946595,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"12","issue":"4","first_page":"263","last_page":"272"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7458590865135193},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6729425191879272},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6635842323303223},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.47002649307250977},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.46618884801864624},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4119095206260681},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2856748700141907},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23225387930870056},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2068558633327484},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08882158994674683}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7458590865135193},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6729425191879272},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6635842323303223},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.47002649307250977},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.46618884801864624},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4119095206260681},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2856748700141907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23225387930870056},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2068558633327484},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08882158994674683},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1631/jzus.c1000091","is_oa":false,"landing_page_url":"https://doi.org/10.1631/jzus.c1000091","pdf_url":null,"source":{"id":"https://openalex.org/S199067057","display_name":"Journal of Zhejiang University SCIENCE C","issn_l":"1869-1951","issn":["1869-1951","1869-196X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311937","host_organization_name":"Zhejiang University Press","host_organization_lineage":["https://openalex.org/P4310311937"],"host_organization_lineage_names":["Zhejiang University Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Zhejiang University SCIENCE C","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1554944419","https://openalex.org/W1587318683","https://openalex.org/W1838945765","https://openalex.org/W1974490028","https://openalex.org/W1981802302","https://openalex.org/W1994035189","https://openalex.org/W2004469916","https://openalex.org/W2008034842","https://openalex.org/W2024290096","https://openalex.org/W2030371206","https://openalex.org/W2038399775","https://openalex.org/W2047448447","https://openalex.org/W2067752346","https://openalex.org/W2068308871","https://openalex.org/W2072644219","https://openalex.org/W2083841057","https://openalex.org/W2105057414","https://openalex.org/W2106651224","https://openalex.org/W2133090982","https://openalex.org/W2139408570","https://openalex.org/W2140211206","https://openalex.org/W2148725305","https://openalex.org/W2150926065","https://openalex.org/W2166849181","https://openalex.org/W2293618063","https://openalex.org/W3215186461","https://openalex.org/W4253161066","https://openalex.org/W6675875803"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2382566571","https://openalex.org/W2141033859","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2349321798","https://openalex.org/W2366686860","https://openalex.org/W2383687187","https://openalex.org/W3036520466"],"abstract_inverted_index":{"To":[0],"date,":[1],"comparing":[2],"and":[3,25,83,91,132,137],"visualizing":[4],"genome":[5,13,44,96],"sequences":[6],"remain":[7],"challenging":[8],"due":[9],"to":[10,38,76,92,130,138],"the":[11,20,27,31,43,58,66,70,78,108,112,124,128,140],"large":[12],"size.":[14],"Existing":[15],"approaches":[16],"take":[17],"advantage":[18],"of":[19,23,30,42,69,80,101,111,120,144],"stable":[21],"property":[22],"oligonucleotides":[24],"exhibit":[26],"main":[28],"characteristics":[29],"whole":[32],"genome,":[33],"yet":[34],"they":[35],"commonly":[36],"fail":[37],"show":[39],"progression":[40],"patterns":[41],"adjustably.":[45],"This":[46],"paper":[47],"presents":[48],"a":[49,88,94,99,118],"novel":[50],"visual":[51,89,113],"encoding":[52],"technique,":[53],"which":[54],"not":[55],"only":[56],"supports":[57],"binning":[59],"process":[60],"(phylogenetic":[61],"analysis),":[62],"but":[63],"also":[64],"allows":[65],"sequential":[67],"analysis":[68],"genome.":[71],"The":[72],"key":[73],"idea":[74],"is":[75],"regard":[77],"combination":[79],"each":[81],"k-nucleotide":[82],"its":[84],"reverse":[85],"complement":[86],"as":[87],"word,":[90],"represent":[93],"long":[95],"sequence":[97],"with":[98],"list":[100],"local":[102,109],"statistical":[103],"feature":[104],"vectors":[105],"derived":[106],"from":[107],"frequency":[110],"words.":[114],"Experimental":[115],"results":[116],"on":[117],"variety":[119],"examples":[121],"demonstrate":[122],"that":[123],"presented":[125],"approach":[126],"has":[127],"ability":[129],"quickly":[131],"intuitively":[133],"visualize":[134],"DNA":[135],"sequences,":[136],"help":[139],"user":[141],"identify":[142],"regions":[143],"differences":[145],"among":[146],"multiple":[147],"datasets.":[148]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
