{"id":"https://openalex.org/W3132900254","doi":"https://doi.org/10.1609/aaai.v36i11.21543","title":"Accelerating COVID-19 Research with Graph Mining and Transformer-Based Learning","display_name":"Accelerating COVID-19 Research with Graph Mining and Transformer-Based Learning","publication_year":2022,"publication_date":"2022-06-28","ids":{"openalex":"https://openalex.org/W3132900254","doi":"https://doi.org/10.1609/aaai.v36i11.21543","mag":"3132900254"},"language":"en","primary_location":{"id":"doi:10.1609/aaai.v36i11.21543","is_oa":true,"landing_page_url":"https://doi.org/10.1609/aaai.v36i11.21543","pdf_url":"https://ojs.aaai.org/index.php/AAAI/article/download/21543/21292","source":{"id":"https://openalex.org/S4210191458","display_name":"Proceedings of the AAAI Conference on Artificial Intelligence","issn_l":"2159-5399","issn":["2159-5399","2374-3468"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310320058","host_organization_name":"Association for the Advancement of Artificial Intelligence","host_organization_lineage":["https://openalex.org/P4310320058"],"host_organization_lineage_names":["Association for the Advancement of Artificial Intelligence"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the AAAI Conference on Artificial Intelligence","raw_type":"journal-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://ojs.aaai.org/index.php/AAAI/article/download/21543/21292","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083306739","display_name":"Ilya Tyagin","orcid":"https://orcid.org/0000-0002-0249-1072"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilya Tyagin","raw_affiliation_strings":["University of Delaware"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Delaware","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002076864","display_name":"Ankit Kulshrestha","orcid":"https://orcid.org/0000-0003-0485-4145"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ankit Kulshrestha","raw_affiliation_strings":["University of Delaware"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Delaware","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057510939","display_name":"Justin Sybrandt","orcid":"https://orcid.org/0000-0001-5073-0122"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Sybrandt","raw_affiliation_strings":["Clemson University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029524511","display_name":"Krish Matta","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155016","display_name":"International Charter School","ror":"https://ror.org/01n18pd19","country_code":"US","type":"education","lineage":["https://openalex.org/I4210155016"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krish Matta","raw_affiliation_strings":["Charter School of Wilmington"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charter School of Wilmington","institution_ids":["https://openalex.org/I4210155016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016479290","display_name":"Michael Shtutman","orcid":"https://orcid.org/0000-0002-2458-3226"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Shtutman","raw_affiliation_strings":["University of South Carolina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Carolina","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057164472","display_name":"Ilya Safro","orcid":"https://orcid.org/0000-0001-6284-7408"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilya Safro","raw_affiliation_strings":["University of Delaware"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Delaware","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.1099,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.89768076,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"36","issue":"11","first_page":"12673","last_page":"12679"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7458505630493164},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5876665115356445},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.458008736371994},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38957875967025757}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7458505630493164},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5876665115356445},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.458008736371994},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38957875967025757}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1609/aaai.v36i11.21543","is_oa":true,"landing_page_url":"https://doi.org/10.1609/aaai.v36i11.21543","pdf_url":"https://ojs.aaai.org/index.php/AAAI/article/download/21543/21292","source":{"id":"https://openalex.org/S4210191458","display_name":"Proceedings of the AAAI Conference on Artificial Intelligence","issn_l":"2159-5399","issn":["2159-5399","2374-3468"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310320058","host_organization_name":"Association for the Advancement of Artificial Intelligence","host_organization_lineage":["https://openalex.org/P4310320058"],"host_organization_lineage_names":["Association for the Advancement of Artificial Intelligence"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the AAAI Conference on Artificial Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:ojs.aaai.org:article/21543","is_oa":false,"landing_page_url":"https://ojs.aaai.org/index.php/AAAI/article/view/21543","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2159-5399","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1609/aaai.v36i11.21543","is_oa":true,"landing_page_url":"https://doi.org/10.1609/aaai.v36i11.21543","pdf_url":"https://ojs.aaai.org/index.php/AAAI/article/download/21543/21292","source":{"id":"https://openalex.org/S4210191458","display_name":"Proceedings of the AAAI Conference on Artificial Intelligence","issn_l":"2159-5399","issn":["2159-5399","2374-3468"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310320058","host_organization_name":"Association for the Advancement of Artificial Intelligence","host_organization_lineage":["https://openalex.org/P4310320058"],"host_organization_lineage_names":["Association for the Advancement of Artificial Intelligence"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the AAAI Conference on Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3132900254.pdf","grobid_xml":"https://content.openalex.org/works/W3132900254.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W2011726136","https://openalex.org/W2052681001","https://openalex.org/W2083225388","https://openalex.org/W2087035995","https://openalex.org/W2115871101","https://openalex.org/W2117446654","https://openalex.org/W2131774270","https://openalex.org/W2159583324","https://openalex.org/W2339319059","https://openalex.org/W2400655354","https://openalex.org/W2411035889","https://openalex.org/W2413102523","https://openalex.org/W2527672088","https://openalex.org/W2563351168","https://openalex.org/W2593864460","https://openalex.org/W2786651430","https://openalex.org/W2793978524","https://openalex.org/W2804778516","https://openalex.org/W2888735575","https://openalex.org/W2921377602","https://openalex.org/W2922551710","https://openalex.org/W2953294533","https://openalex.org/W2963783392","https://openalex.org/W2964015378","https://openalex.org/W2965579538","https://openalex.org/W2966055012","https://openalex.org/W2973154071","https://openalex.org/W2974004142","https://openalex.org/W2991749581","https://openalex.org/W3005906795","https://openalex.org/W3020786614","https://openalex.org/W3030413700","https://openalex.org/W3030763919","https://openalex.org/W3038082146","https://openalex.org/W3044799436","https://openalex.org/W3093150592","https://openalex.org/W3093787311","https://openalex.org/W3097569839","https://openalex.org/W3101560710","https://openalex.org/W3103330112","https://openalex.org/W3106224367","https://openalex.org/W3109705195","https://openalex.org/W3110032345","https://openalex.org/W3112509512","https://openalex.org/W3115204297","https://openalex.org/W3119286183","https://openalex.org/W3121487135","https://openalex.org/W3132900254","https://openalex.org/W4287868007","https://openalex.org/W4300798768","https://openalex.org/W6752156979"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"In":[0,167],"2020,":[1],"the":[2,6,11,37,55,65,72,122,159,171,179,190],"White":[3],"House":[4],"released":[5,157],"\u201cCall":[7],"to":[8,10,26,45,80,98,158,163,183],"Action":[9],"Tech":[12],"Community":[13],"on":[14,121],"New":[15],"Machine":[16],"Readable":[17],"COVID-19":[18,66,115,193],"Dataset,\u201d":[19],"wherein":[20],"artificial":[21],"intelligence":[22],"experts":[23],"are":[24,119,130,156,181,203],"asked":[25],"collect":[27],"data":[28],"and":[29,52,112,125,137,155,194,200],"develop":[30],"text":[31],"mining":[32,124],"techniques":[33],"that":[34,178],"can":[35,93],"help":[36],"science":[38],"community":[39,162],"answer":[40],"high-priority":[41],"scientific":[42,161],"questions":[43],"related":[44],"COVID-19.":[46],"The":[47,117,128],"Allen":[48],"Institute":[49],"for":[50,114],"AI":[51],"collaborators":[53],"announced":[54],"availability":[56],"of":[57,63,74],"a":[58],"rapidly":[59],"growing":[60],"open":[61],"dataset":[62],"publications,":[64],"Open":[67],"Research":[68],"Dataset":[69],"(CORD-19).":[70],"As":[71],"pace":[73],"research":[75,186],"accelerates,":[76],"biomedical":[77,165],"scientists":[78,87],"struggle":[79],"stay":[81],"current.":[82],"To":[83],"expedite":[84],"their":[85],"investigations,":[86],"leverage":[88],"hypothesis":[89,108],"generation":[90,109],"systems,":[91],"which":[92],"automatically":[94],"inspect":[95],"published":[96],"papers":[97],"discover":[99,184],"novel":[100],"implicit":[101],"connections.":[102],"We":[103],"present":[104],"automated":[105],"general":[106],"purpose":[107],"systems":[110,118,129,145,180],"AGATHA-C":[111],"AGATHA-GP":[113],"research.":[116,166],"based":[120],"graph":[123],"transformer":[126],"models.":[127],"massively":[131],"validated":[132],"using":[133],"retrospective":[134],"information":[135],"rediscovery":[136],"proactive":[138],"analysis":[139],"involving":[140],"human-in-the-loop":[141],"expert":[142,173],"analysis.":[143],"Both":[144],"achieve":[146],"high-quality":[147],"predictions":[148],"across":[149],"domains":[150],"in":[151],"fast":[152],"computational":[153],"time":[154],"broad":[160],"accelerate":[164],"addition,":[168],"by":[169],"performing":[170],"domain":[172],"curated":[174],"study,":[175],"we":[176],"show":[177],"able":[182],"ongoing":[185],"findings":[187],"such":[188],"as":[189],"relationship":[191],"between":[192],"oxytocin":[195],"hormone.":[196],"All":[197],"code,":[198],"details,":[199],"pre-trained":[201],"models":[202],"available":[204],"at":[205],"https://github.com/IlyaTyagin/AGATHA-C-GP.":[206]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
