{"id":"https://openalex.org/W4213456065","doi":"https://doi.org/10.1561/0100000117","title":"Information-Theoretic Foundations of DNA Data Storage","display_name":"Information-Theoretic Foundations of DNA Data Storage","publication_year":2022,"publication_date":"2022-02-24","ids":{"openalex":"https://openalex.org/W4213456065","doi":"https://doi.org/10.1561/0100000117"},"language":"en","primary_location":{"id":"doi:10.1561/0100000117","is_oa":false,"landing_page_url":"https://doi.org/10.1561/0100000117","pdf_url":null,"source":{"id":"https://openalex.org/S70831867","display_name":"Foundations and Trends\u00ae in Communications and Information Theory","issn_l":"1567-2190","issn":["1567-2190","1567-2328"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318575","host_organization_name":"Now Publishers","host_organization_lineage":["https://openalex.org/P4310318575"],"host_organization_lineage_names":["Now Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Foundations and Trends\u00ae in Communications and Information Theory","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2211.05552","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046640187","display_name":"Ilan Shomorony","orcid":"https://orcid.org/0000-0001-5077-2269"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ilan Shomorony","raw_affiliation_strings":["University of Illinois at Urbana-Champaign ,","University of Illinois at Urbana-Champaign, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign ,","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003606899","display_name":"Reinhard Heckel","orcid":"https://orcid.org/0000-0002-2874-2984"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Reinhard Heckel","raw_affiliation_strings":["Technical University of Munich, Germany, and Rice University ,","Technical University of Munich, Germany, and Rice University, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Germany, and Rice University ,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Germany, and Rice University, USA","institution_ids":["https://openalex.org/I62916508","https://openalex.org/I74775410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046640187"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":4.4178,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.95837521,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"19","issue":"1","first_page":"1","last_page":"106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.92330002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.6126046180725098},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.570280134677887},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5489981770515442},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5091895461082458},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4841237962245941},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.4658103287220001},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4214509129524231},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.29526448249816895},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2028927206993103},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1233910620212555},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12299224734306335},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.12256193161010742},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.08609846234321594}],"concepts":[{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.6126046180725098},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.570280134677887},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5489981770515442},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5091895461082458},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4841237962245941},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.4658103287220001},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4214509129524231},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.29526448249816895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2028927206993103},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1233910620212555},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12299224734306335},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.12256193161010742},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.08609846234321594},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1561/0100000117","is_oa":false,"landing_page_url":"https://doi.org/10.1561/0100000117","pdf_url":null,"source":{"id":"https://openalex.org/S70831867","display_name":"Foundations and Trends\u00ae in Communications and Information Theory","issn_l":"1567-2190","issn":["1567-2190","1567-2328"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318575","host_organization_name":"Now Publishers","host_organization_lineage":["https://openalex.org/P4310318575"],"host_organization_lineage_names":["Now Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Foundations and Trends\u00ae in Communications and Information Theory","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:2211.05552","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2211.05552","pdf_url":"https://arxiv.org/pdf/2211.05552","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2211.05552","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2211.05552","pdf_url":"https://arxiv.org/pdf/2211.05552","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.49000000953674316,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2551409286","display_name":null,"funder_award_id":"2007597","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5379280013","display_name":null,"funder_award_id":"CCF-2007597","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5958224978","display_name":null,"funder_award_id":"964995","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4213456065.pdf","grobid_xml":"https://content.openalex.org/works/W4213456065.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4255246195","https://openalex.org/W2265877813","https://openalex.org/W2126256889","https://openalex.org/W2372042166","https://openalex.org/W2388931296","https://openalex.org/W2041198660","https://openalex.org/W2049083263","https://openalex.org/W2494523064","https://openalex.org/W2943623134","https://openalex.org/W2588219639"],"abstract_inverted_index":{"Due":[0],"to":[1,55,100,187,268,300],"its":[2],"longevity":[3],"and":[4,27,120,130,151,173,209,252,292,296,315],"enormous":[5],"information":[6,153,167,198],"density,":[7],"DNA":[8,18,32,59,91,111,118,135,155,207,225,236,263,283],"is":[9,48,61,106,186,231,256,267],"an":[10,242,302],"attractive":[11],"medium":[12],"for":[13,79,305,313],"archival":[14],"data":[15,85,105,230,255],"storage.":[16,86],"Natural":[17],"more":[19,45],"than":[20,46,287],"700.000":[21],"years":[22],"old":[23],"has":[24],"been":[25],"recovered,":[26],"about":[28],"5":[29],"grams":[30],"of":[31,39,43,70,84,95,97,148,177,183,196,223,272,274,281,308],"can":[33,93,168],"in":[34,88,103,116,127,154,241],"principle":[35],"hold":[36],"a":[37,68,76,117,161,213],"Zetabyte":[38],"digital":[40],"information,":[41],"orders":[42],"magnitude":[44],"what":[47],"achieved":[49],"on":[50,108,172,199,206,278,289],"conventional":[51],"storage":[52,60,72,226,284],"media.":[53],"Thanks":[54],"rapid":[56],"technological":[57,101,204],"advances,":[58],"becoming":[62],"practically":[63],"feasible,":[64],"as":[65,132,134],"demonstrated":[66],"by":[67,191,202,250,258],"number":[69],"experimental":[71],"systems,":[73],"making":[74,145],"it":[75],"promising":[77],"solution":[78],"our":[80],"society's":[81],"increasing":[82],"need":[83],"While":[87],"living":[89],"things,":[90],"molecules":[92,237,247],"consist":[94],"millions":[96,176],"nucleotides,":[98],"due":[99],"constraints,":[102],"practice,":[104],"stored":[107,171,240],"many":[109,234],"short":[110,178,235],"molecules,":[112],"which":[113],"are":[114,239,248],"preserved":[115],"pool":[119],"cannot":[121],"be":[122,169],"spatially":[123],"ordered.":[124],"Moreover,":[125],"imperfections":[126],"sequencing,":[128,210],"synthesis,":[129],"handling,":[131],"well":[133],"decay":[136],"during":[137],"storage,":[138],"introduce":[139],"random":[140],"noise":[141,251],"into":[142],"the":[143,146,193,224,229,246,254,262,270,279,282,306],"system,":[144],"task":[147],"reliably":[149,170],"storing":[150,197],"retrieving":[152],"challenging.":[156],"This":[157],"unique":[158],"setup":[159],"raises":[160],"natural":[162],"information-theoretic":[163,303],"question:":[164],"how":[165],"much":[166],"reconstructed":[174],"from":[175,261],"noisy":[179],"sequences?":[180],"The":[181],"goal":[182,266],"this":[184,189],"monograph":[185],"address":[188],"question":[190],"discussing":[192],"fundamental":[194],"limits":[195],"DNA.":[200],"Motivated":[201],"current":[203],"constraints":[205],"synthesis":[208],"we":[211,298],"propose":[212],"probabilistic":[214],"channel":[215],"model":[216],"that":[217,238],"captures":[218],"three":[219],"key":[220,276],"distinctive":[221],"aspects":[222,277],"systems:":[227],"(1)":[228],"written":[232],"onto":[233],"unordered":[243],"fashion;":[244],"(2)":[245],"corrupted":[249],"(3)":[253],"read":[257],"randomly":[259],"sampling":[260],"pool.":[264],"Our":[265],"investigate":[269],"impact":[271],"each":[273],"these":[275,309],"capacity":[280],"system.":[285],"Rather":[286],"focusing":[288],"coding-theoretic":[290],"considerations":[291],"computationally":[293],"efficient":[294],"encoding":[295],"decoding,":[297],"aim":[299],"build":[301],"foundation":[304],"analysis":[307],"channels,":[310],"developing":[311],"tools":[312],"achievability":[314],"converse":[316],"arguments.":[317]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
