{"id":"https://openalex.org/W4387619742","doi":"https://doi.org/10.15439/2023f2076","title":"Adding Linguistic Information to Transformer Models Improves Biomedical Event Detection?","display_name":"Adding Linguistic Information to Transformer Models Improves Biomedical Event Detection?","publication_year":2023,"publication_date":"2023-09-26","ids":{"openalex":"https://openalex.org/W4387619742","doi":"https://doi.org/10.15439/2023f2076"},"language":"en","primary_location":{"id":"doi:10.15439/2023f2076","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15439/2023f2076","pdf_url":"https://annals-csis.org/Volume_35/drp/pdf/2076.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://annals-csis.org/Volume_35/drp/pdf/2076.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044310378","display_name":"Laura Zanella","orcid":"https://orcid.org/0009-0008-7904-8029"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Laura Zanella","raw_affiliation_strings":["LORIA (Universit de Lorraine, CNRS, Inria) Nancy, France","ORPAILLEUR - Knowledge representation, reasonning (France)"],"affiliations":[{"raw_affiliation_string":"LORIA (Universit de Lorraine, CNRS, Inria) Nancy, France","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I1294671590","https://openalex.org/I90183372"]},{"raw_affiliation_string":"ORPAILLEUR - Knowledge representation, reasonning (France)","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063951580","display_name":"Yannick Toussaint","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yannick Toussaint","raw_affiliation_strings":["LORIA (Universit de Lorraine, CNRS, Inria) Nancy, France","ORPAILLEUR - Knowledge representation, reasonning (France)"],"affiliations":[{"raw_affiliation_string":"LORIA (Universit de Lorraine, CNRS, Inria) Nancy, France","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I1294671590","https://openalex.org/I90183372"]},{"raw_affiliation_string":"ORPAILLEUR - Knowledge representation, reasonning (France)","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044310378"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210121838","https://openalex.org/I90183372"],"apc_list":null,"apc_paid":null,"fwci":0.1097,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.30979381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"35","issue":null,"first_page":"1211","last_page":"1216"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9180999994277954,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9180999994277954,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6226614713668823},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5758605599403381},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5036219954490662},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4278087019920349},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42322009801864624},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14771264791488647},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.06571036577224731},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.0596143901348114}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6226614713668823},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5758605599403381},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5036219954490662},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4278087019920349},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42322009801864624},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14771264791488647},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06571036577224731},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0596143901348114},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.15439/2023f2076","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15439/2023f2076","pdf_url":"https://annals-csis.org/Volume_35/drp/pdf/2076.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-04197974v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04197974","pdf_url":"https://hal.science/hal-04197974v1/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1st Symposium on Challenges for Natural Language Processing (CNLPS\u201923), 18th Conference on Computer Science and Intelligence Systems FedCSIS 2023, Sep 2023, Varsovie, Poland. &#x27E8;10.15439/2023F2076&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:doaj.org/article:be7c138573f94d2ca5991fc1fd4c4d4f","is_oa":true,"landing_page_url":"https://doaj.org/article/be7c138573f94d2ca5991fc1fd4c4d4f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Annals of computer science and information systems, Vol 35, Pp 1211-1216 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.15439/2023f2076","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15439/2023f2076","pdf_url":"https://annals-csis.org/Volume_35/drp/pdf/2076.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387619742.pdf","grobid_xml":"https://content.openalex.org/works/W4387619742.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W97427318","https://openalex.org/W154351976","https://openalex.org/W1630427015","https://openalex.org/W2143995218","https://openalex.org/W2250469303","https://openalex.org/W2250876458","https://openalex.org/W2442924240","https://openalex.org/W2775730905","https://openalex.org/W2788474500","https://openalex.org/W2911489562","https://openalex.org/W2916355958","https://openalex.org/W2963341956","https://openalex.org/W2963826794","https://openalex.org/W2964779968","https://openalex.org/W2970771982","https://openalex.org/W3006760189","https://openalex.org/W3034238904","https://openalex.org/W3036559261","https://openalex.org/W3046375318","https://openalex.org/W3100192071","https://openalex.org/W3120321582","https://openalex.org/W3212241566","https://openalex.org/W4291127651","https://openalex.org/W4298147639","https://openalex.org/W6681262047","https://openalex.org/W6718577050"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Biomedical":[0],"event":[1,8,14,144],"detection":[2,37],"is":[3,79,107,128],"an":[4],"essential":[5],"subtask":[6],"of":[7,20,28,32,38,75,85,115,123],"extraction":[9],"that":[10,120,127],"identifies":[11],"and":[12,30,43,62,69,89,94,132,135],"classifies":[13],"triggers,":[15],"indicating":[16],"the":[17,26,36,45,76,83,86,100,105,121,147],"possible":[18],"construction":[19],"events.In":[21],"this":[22],"work":[23],"we":[24],"propose":[25],"comparison":[27],"BERT":[29],"four":[31],"its":[33,139],"variants":[34],"for":[35,138],"biomedical":[39,60,134,148],"events":[40],"to":[41,142],"evaluate":[42],"analyze":[44],"differences":[46],"in":[47,58,146],"their":[48],"performance.The":[49],"models":[50,88],"are":[51],"learned":[52],"using":[53,109],"seven":[54],"manually":[55],"annotated":[56],"corpora":[57],"different":[59,151],"subdomains":[61],"fine-tuned":[63],"by":[64,81,90],"adding":[65,91],"a":[66,70,92,95,110,124],"linear":[67],"layer":[68,72],"Bi-LSTM":[71,111],"on":[73],"top":[74],"models.The":[77],"evaluation":[78],"done":[80,108],"comparing":[82],"behavior":[84],"original":[87],"lexical":[93],"syntactic":[96],"features.SciBERT":[97],"emerged":[98],"as":[99],"highest":[101],"performing":[102],"model":[103,126],"when":[104],"fine-tuning":[106],"layer,":[112],"without":[113],"need":[114],"extra":[116],"features.This":[117],"result":[118],"suggests":[119],"use":[122],"transformer":[125],"pretrained":[129],"from":[130],"scratch":[131],"uses":[133],"general":[136],"data":[137],"pretraining,":[140],"allows":[141],"detect":[143],"triggers":[145],"domain":[149],"covering":[150],"subdomains.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
