{"id":"https://openalex.org/W4387524544","doi":"https://doi.org/10.15439/2023f7645","title":"Polyhedral Tiling Strategies for the Zuker Algorithm Optimization","display_name":"Polyhedral Tiling Strategies for the Zuker Algorithm Optimization","publication_year":2023,"publication_date":"2023-10-11","ids":{"openalex":"https://openalex.org/W4387524544","doi":"https://doi.org/10.15439/2023f7645"},"language":"en","primary_location":{"id":"doi:10.15439/2023f7645","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15439/2023f7645","pdf_url":"https://annals-csis.org/Volume_37/drp/pdf/7645.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://annals-csis.org/Volume_37/drp/pdf/7645.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088179088","display_name":"W\u0142odzimierz Bielecki","orcid":"https://orcid.org/0000-0002-7943-6207"},"institutions":[{"id":"https://openalex.org/I155313962","display_name":"West Pomeranian University of Technology in Szczecin","ror":"https://ror.org/0596m7f19","country_code":"PL","type":"education","lineage":["https://openalex.org/I155313962"]},{"id":"https://openalex.org/I79833322","display_name":"Pomeranian Medical University","ror":"https://ror.org/01v1rak05","country_code":"PL","type":"education","lineage":["https://openalex.org/I79833322"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wlodzimierz Bielecki","raw_affiliation_strings":["West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland"],"affiliations":[{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","institution_ids":["https://openalex.org/I155313962","https://openalex.org/I79833322"]},{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland","institution_ids":["https://openalex.org/I155313962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044868188","display_name":"Marek Pa\u0142kowski","orcid":"https://orcid.org/0000-0002-5932-4523"},"institutions":[{"id":"https://openalex.org/I155313962","display_name":"West Pomeranian University of Technology in Szczecin","ror":"https://ror.org/0596m7f19","country_code":"PL","type":"education","lineage":["https://openalex.org/I155313962"]},{"id":"https://openalex.org/I79833322","display_name":"Pomeranian Medical University","ror":"https://ror.org/01v1rak05","country_code":"PL","type":"education","lineage":["https://openalex.org/I79833322"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Marek Palkowski","raw_affiliation_strings":["West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland"],"affiliations":[{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","institution_ids":["https://openalex.org/I155313962","https://openalex.org/I79833322"]},{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland","institution_ids":["https://openalex.org/I155313962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025654551","display_name":"Piotr B\u0142aszy\u0144ski","orcid":"https://orcid.org/0000-0001-8892-7705"},"institutions":[{"id":"https://openalex.org/I155313962","display_name":"West Pomeranian University of Technology in Szczecin","ror":"https://ror.org/0596m7f19","country_code":"PL","type":"education","lineage":["https://openalex.org/I155313962"]},{"id":"https://openalex.org/I79833322","display_name":"Pomeranian Medical University","ror":"https://ror.org/01v1rak05","country_code":"PL","type":"education","lineage":["https://openalex.org/I79833322"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Piotr Blaszynski","raw_affiliation_strings":["West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland"],"affiliations":[{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","institution_ids":["https://openalex.org/I155313962","https://openalex.org/I79833322"]},{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland","institution_ids":["https://openalex.org/I155313962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034113240","display_name":"Maciej Poliwoda","orcid":null},"institutions":[{"id":"https://openalex.org/I155313962","display_name":"West Pomeranian University of Technology in Szczecin","ror":"https://ror.org/0596m7f19","country_code":"PL","type":"education","lineage":["https://openalex.org/I155313962"]},{"id":"https://openalex.org/I79833322","display_name":"Pomeranian Medical University","ror":"https://ror.org/01v1rak05","country_code":"PL","type":"education","lineage":["https://openalex.org/I79833322"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Maciej Poliwoda","raw_affiliation_strings":["West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland"],"affiliations":[{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49 , 71-210 Szczecin , Poland","institution_ids":["https://openalex.org/I155313962","https://openalex.org/I79833322"]},{"raw_affiliation_string":"West Pomeranian University of Technology in Szczecin ul. Zolnierska 49, 71-210 Szczecin, Poland","institution_ids":["https://openalex.org/I155313962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5044868188"],"corresponding_institution_ids":["https://openalex.org/I155313962","https://openalex.org/I79833322"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28535354,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":null,"first_page":"37","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11887","display_name":"Quasicrystal Structures and Properties","score":0.8593000173568726,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11887","display_name":"Quasicrystal Structures and Properties","score":0.8593000173568726,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.8483999967575073,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11315","display_name":"Phase-change materials and chalcogenides","score":0.8303999900817871,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6381856799125671},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.472394198179245}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6381856799125671},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.472394198179245}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.15439/2023f7645","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15439/2023f7645","pdf_url":"https://annals-csis.org/Volume_37/drp/pdf/7645.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:doaj.org/article:4b3760c57c49427bb6bf474340b394ce","is_oa":true,"landing_page_url":"https://doaj.org/article/4b3760c57c49427bb6bf474340b394ce","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Annals of computer science and information systems, Vol 37, Pp 37-41 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.15439/2023f7645","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15439/2023f7645","pdf_url":"https://annals-csis.org/Volume_37/drp/pdf/7645.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387524544.pdf","grobid_xml":"https://content.openalex.org/works/W4387524544.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1503700136","https://openalex.org/W1506424797","https://openalex.org/W1984675364","https://openalex.org/W2025763720","https://openalex.org/W2027131996","https://openalex.org/W2034761517","https://openalex.org/W2054931730","https://openalex.org/W2087001748","https://openalex.org/W2087064593","https://openalex.org/W2113816707","https://openalex.org/W2498116915","https://openalex.org/W2528222261","https://openalex.org/W2560832313","https://openalex.org/W2621218774","https://openalex.org/W2768219932","https://openalex.org/W2942268808","https://openalex.org/W2974404579","https://openalex.org/W3012432066","https://openalex.org/W3099448935","https://openalex.org/W4298109404","https://openalex.org/W4307227773","https://openalex.org/W4367155904","https://openalex.org/W6664193207"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3],"focus":[4],"on":[5,50,63],"optimizing":[6],"the":[7,11,20,51,82,107,110],"code":[8],"for":[9],"computing":[10],"Zuker":[12],"RNA":[13],"folding":[14],"algorithm.This":[15],"bioinformatics":[16],"task":[17],"belongs":[18],"to":[19,44,76],"class":[21],"of":[22,68,86,109],"non-serial":[23],"polyadic":[24],"dynamic":[25],"programming,":[26],"which":[27],"involves":[28],"non-uniform":[29],"program":[30],"loop":[31],"dependencies.However,":[32],"its":[33],"dependence":[34,69],"pattern":[35],"can":[36],"be":[37],"represented":[38],"using":[39],"affine":[40,64],"formulas,":[41],"allowing":[42],"us":[43],"automatically":[45,77],"employ":[46],"tiling":[47],"strategies":[48],"based":[49,62],"polyhedral":[52],"method.We":[53],"use":[54],"three":[55],"source-to-source":[56],"compilers":[57],"Pluto,":[58],"Traco,":[59],"and":[60,72,84,89,102],"Dapt":[61],"transformations,":[65],"transitive":[66],"closure":[67],"relation":[70],"graph":[71],"spacetime":[73],"tiling,":[74],"respectively,":[75],"generate":[78],"cache-efficient":[79],"codes.We":[80],"evaluate":[81],"speed-up":[83],"scalability":[85],"optimized":[87],"codes":[88],"check":[90],"their":[91],"performance":[92],"employing":[93],"applying":[94],"two":[95],"multi-core":[96],"machines.We":[97],"also":[98],"discuss":[99],"related":[100],"approaches":[101],"outline":[103],"future":[104],"work":[105],"in":[106],"conclusion":[108],"paper.":[111]},"counts_by_year":[],"updated_date":"2026-03-08T06:56:09.383167","created_date":"2025-10-10T00:00:00"}
