{"id":"https://openalex.org/W4298147581","doi":"https://doi.org/10.15439/2022f63","title":"Named Entity Recognition System for the Biomedical Domain","display_name":"Named Entity Recognition System for the Biomedical Domain","publication_year":2022,"publication_date":"2022-09-26","ids":{"openalex":"https://openalex.org/W4298147581","doi":"https://doi.org/10.15439/2022f63"},"language":"en","primary_location":{"id":"doi:10.15439/2022f63","is_oa":true,"landing_page_url":"https://doi.org/10.15439/2022f63","pdf_url":"https://annals-csis.org/proceedings/2022/drp/pdf/63.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://annals-csis.org/proceedings/2022/drp/pdf/63.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108784223","display_name":"Raghav Sharan Sharma","orcid":null},"institutions":[{"id":"https://openalex.org/I154851008","display_name":"Indian Institute of Technology Roorkee","ror":"https://ror.org/00582g326","country_code":"IN","type":"education","lineage":["https://openalex.org/I154851008"]},{"id":"https://openalex.org/I145894827","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511","country_code":"IN","type":"education","lineage":["https://openalex.org/I145894827"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Raghav Sharma","raw_affiliation_strings":["Indian Institute of Technology Kharagpur Kharagpur, India","Indian Institute of Technology Roorkee Roorkee, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Kharagpur Kharagpur, India","institution_ids":["https://openalex.org/I145894827"]},{"raw_affiliation_string":"Indian Institute of Technology Roorkee Roorkee, India","institution_ids":["https://openalex.org/I154851008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037020317","display_name":"Deependra Pratap Singh","orcid":"https://orcid.org/0000-0002-8897-7777"},"institutions":[{"id":"https://openalex.org/I154851008","display_name":"Indian Institute of Technology Roorkee","ror":"https://ror.org/00582g326","country_code":"IN","type":"education","lineage":["https://openalex.org/I154851008"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Deependra Singh","raw_affiliation_strings":["Indian Institute of Technology Roorkee Roorkee, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Roorkee Roorkee, India","institution_ids":["https://openalex.org/I154851008"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102868405","display_name":"Raksha Sharma","orcid":"https://orcid.org/0009-0007-2892-5522"},"institutions":[{"id":"https://openalex.org/I154851008","display_name":"Indian Institute of Technology Roorkee","ror":"https://ror.org/00582g326","country_code":"IN","type":"education","lineage":["https://openalex.org/I154851008"]},{"id":"https://openalex.org/I145894827","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511","country_code":"IN","type":"education","lineage":["https://openalex.org/I145894827"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Raksha Sharma","raw_affiliation_strings":["Indian Institute of Technology Kharagpur Kharagpur, India","Indian Institute of Technology Roorkee Roorkee, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Kharagpur Kharagpur, India","institution_ids":["https://openalex.org/I145894827"]},{"raw_affiliation_string":"Indian Institute of Technology Roorkee Roorkee, India","institution_ids":["https://openalex.org/I154851008"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5108784223"],"corresponding_institution_ids":["https://openalex.org/I145894827","https://openalex.org/I154851008"],"apc_list":null,"apc_paid":null,"fwci":0.4158,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.58204051,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"30","issue":null,"first_page":"837","last_page":"840"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9610999822616577,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9093999862670898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7173169255256653},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5302642583847046},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36830785870552063},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.35546043515205383},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06568539142608643}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7173169255256653},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5302642583847046},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36830785870552063},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.35546043515205383},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06568539142608643},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.15439/2022f63","is_oa":true,"landing_page_url":"https://doi.org/10.15439/2022f63","pdf_url":"https://annals-csis.org/proceedings/2022/drp/pdf/63.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:doaj.org/article:742699e46caa420096a7a96f13d06caf","is_oa":true,"landing_page_url":"https://doaj.org/article/742699e46caa420096a7a96f13d06caf","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Annals of computer science and information systems, Vol 30, Pp 837-840 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.15439/2022f63","is_oa":true,"landing_page_url":"https://doi.org/10.15439/2022f63","pdf_url":"https://annals-csis.org/proceedings/2022/drp/pdf/63.pdf","source":{"id":"https://openalex.org/S4220651875","display_name":"Annals of Computer Science and Information Systems","issn_l":"2300-5963","issn":["2300-5963"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310317484","host_organization_name":"Polskie Towarzystwo Informatyczne","host_organization_lineage":["https://openalex.org/P4310317484"],"host_organization_lineage_names":["Polskie Towarzystwo Informatyczne"],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of Computer Science and Information Systems","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4298147581.pdf","grobid_xml":"https://content.openalex.org/works/W4298147581.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1553529581","https://openalex.org/W1940872118","https://openalex.org/W2014849717","https://openalex.org/W2050331639","https://openalex.org/W2094591616","https://openalex.org/W2124657827","https://openalex.org/W2166468803","https://openalex.org/W2168041406","https://openalex.org/W2179519966","https://openalex.org/W2250539671","https://openalex.org/W2470673105","https://openalex.org/W2734608416","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2937867548","https://openalex.org/W2938179091","https://openalex.org/W2945785363","https://openalex.org/W2963548348","https://openalex.org/W2963625095","https://openalex.org/W2995435108","https://openalex.org/W3173293281","https://openalex.org/W4385245566","https://openalex.org/W6640362995","https://openalex.org/W6691431627","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"The":[0,21],"recent":[1],"advancements":[2],"in":[3,11,68,89,108,141,161,182],"medical":[4],"science":[5],"have":[6],"caused":[7],"a":[8,33,56,179,192],"considerable":[9],"acceleration":[10],"the":[12,69,90,95,109,142,147,158,162,166,175],"rate":[13],"at":[14,26],"which":[15],"new":[16,28],"information":[17,60,67,80,86],"is":[18,24,40,55,76,112],"being":[19],"published.":[20],"MEDLINE":[22],"database":[23],"growing":[25],"500,000":[27],"citations":[29],"each":[30],"year.":[31],"As":[32],"result":[34],"of":[35,51,150,168],"this":[36,48,124],"exponential":[37],"increase,":[38],"it":[39,152,171],"not":[41],"easy":[42],"to":[43,63,84,94,137,146],"manually":[44],"keep":[45],"up":[46],"with":[47,199],"increasing":[49],"swell":[50],"information.":[52],"Thus,":[53],"there":[54],"need":[57],"for":[58,157,174],"automatic":[59],"extraction":[61,81],"systems":[62],"retrieve":[64],"and":[65,100,135,201],"organize":[66],"biomedical":[70,91,110,143,163],"domain.":[71,92,164],"Biomedical":[72],"Named":[73],"Entity":[74],"Recognition":[75],"one":[77],"such":[78],"fundamental":[79],"task,":[82],"leading":[83],"significant":[85,180],"management":[87],"goals":[88],"Due":[93,145],"complex":[96],"vocabulary":[97],"(e.g.,":[98,103],"mRNA)":[99],"free":[101],"nomenclature":[102],"IL2),":[104],"identifying":[105],"named":[106,139],"entities":[107,140],"domain":[111],"more":[113,172],"challenging":[114],"than":[115],"any":[116],"other":[117],"domain,":[118],"hence":[119],"requires":[120],"special":[121],"attention.":[122],"In":[123,188],"paper,":[125],"we":[126,190],"deploy":[127],"two":[128],"novel":[129],"bi-directional":[130],"encoder-based":[131],"systems,":[132],"viz.,":[133],"BioBERT":[134],"RoBERTa":[136,169,185],"identify":[138],"text.":[144],"domain-specific":[148],"training":[149,196],"BioBERT,":[151],"gives":[153],"reasonably":[154],"good":[155],"performance":[156],"NER":[159],"task":[160],"However,":[165],"structure":[167],"makes":[170],"suitable":[173],"task.":[176],"We":[177],"obtain":[178],"improvement":[181],"F-score":[183],"by":[184],"over":[186],"BioBERT.":[187],"addition,":[189],"present":[191],"comparative":[193],"study":[194],"on":[195],"loss":[197],"attained":[198],"ADAM":[200],"LAMB":[202],"optimizers.":[203]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
