{"id":"https://openalex.org/W4396899087","doi":"https://doi.org/10.15388/24-infor558","title":"ALMERIA: Boosting Pairwise Molecular Contrasts with Scalable Methods","display_name":"ALMERIA: Boosting Pairwise Molecular Contrasts with Scalable Methods","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4396899087","doi":"https://doi.org/10.15388/24-infor558"},"language":"en","primary_location":{"id":"doi:10.15388/24-infor558","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15388/24-infor558","pdf_url":"https://informatica.vu.lt/journal/INFORMATICA/article/1335/file/pdf","source":{"id":"https://openalex.org/S57195646","display_name":"Informatica","issn_l":"0868-4952","issn":["0868-4952","1822-8844"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://informatica.vu.lt/journal/INFORMATICA/article/1335/file/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002291518","display_name":"Rafael Mena-Yedra","orcid":"https://orcid.org/0000-0002-7046-6741"},"institutions":[{"id":"https://openalex.org/I52354020","display_name":"University of Almer\u00eda","ror":"https://ror.org/003d3xx08","country_code":"ES","type":"education","lineage":["https://openalex.org/I52354020"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Rafael Mena-Yedra","raw_affiliation_strings":["Supercomputing -Algorithms Research Group (SAL), University of Almer\u00eda, Agrifood Campus of International Excellence, ceiA3, Spain"],"raw_orcid":"https://orcid.org/0000-0002-7046-6741","affiliations":[{"raw_affiliation_string":"Supercomputing -Algorithms Research Group (SAL), University of Almer\u00eda, Agrifood Campus of International Excellence, ceiA3, Spain","institution_ids":["https://openalex.org/I52354020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068036832","display_name":"Juana L. Redondo","orcid":"https://orcid.org/0000-0003-2826-1635"},"institutions":[{"id":"https://openalex.org/I52354020","display_name":"University of Almer\u00eda","ror":"https://ror.org/003d3xx08","country_code":"ES","type":"education","lineage":["https://openalex.org/I52354020"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juana L\u00f3pez Redondo","raw_affiliation_strings":["Supercomputing -Algorithms Research Group (SAL), University of Almer\u00eda, Agrifood Campus of International Excellence, ceiA3, Spain"],"raw_orcid":"https://orcid.org/0000-0003-2826-1635","affiliations":[{"raw_affiliation_string":"Supercomputing -Algorithms Research Group (SAL), University of Almer\u00eda, Agrifood Campus of International Excellence, ceiA3, Spain","institution_ids":["https://openalex.org/I52354020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037673215","display_name":"Horacio P\u00e9rez\u2010S\u00e1nchez","orcid":null},"institutions":[{"id":"https://openalex.org/I68763199","display_name":"Universidad Cat\u00f3lica de Murcia","ror":"https://ror.org/05b1rsv17","country_code":"ES","type":"education","lineage":["https://openalex.org/I68763199"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Horacio P\u00e9rez-S\u00e1nchez","raw_affiliation_strings":["Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica de Murcia (UCAM), Spain"],"raw_orcid":"https://orcid.org/0000-0003-4468-7898","affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and High Performance Computing Research Group (BIO-HPC), Universidad Cat\u00f3lica de Murcia (UCAM), Spain","institution_ids":["https://openalex.org/I68763199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073715995","display_name":"Pilar M. Ortigosa","orcid":"https://orcid.org/0000-0001-6514-6543"},"institutions":[{"id":"https://openalex.org/I52354020","display_name":"University of Almer\u00eda","ror":"https://ror.org/003d3xx08","country_code":"ES","type":"education","lineage":["https://openalex.org/I52354020"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pilar Martinez Ortigosa","raw_affiliation_strings":["Supercomputing -Algorithms Research Group (SAL), University of Almer\u00eda, Agrifood Campus of International Excellence, ceiA3, Spain"],"raw_orcid":"https://orcid.org/0000-0001-6514-6543","affiliations":[{"raw_affiliation_string":"Supercomputing -Algorithms Research Group (SAL), University of Almer\u00eda, Agrifood Campus of International Excellence, ceiA3, Spain","institution_ids":["https://openalex.org/I52354020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002291518"],"corresponding_institution_ids":["https://openalex.org/I52354020"],"apc_list":null,"apc_paid":null,"fwci":0.6914,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70806276,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"617","last_page":"648"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13180","display_name":"Chemistry and Chemical Engineering","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.8335025310516357},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.8087863922119141},{"id":"https://openalex.org/keywords/almeria","display_name":"Almeria","score":0.7560875415802002},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5294066667556763},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4976237118244171},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40744298696517944},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3500022888183594},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3372787833213806},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14558923244476318},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.061472803354263306},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.05881693959236145}],"concepts":[{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.8335025310516357},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.8087863922119141},{"id":"https://openalex.org/C2780781906","wikidata":"https://www.wikidata.org/wiki/Q4733780","display_name":"Almeria","level":2,"score":0.7560875415802002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5294066667556763},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4976237118244171},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40744298696517944},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3500022888183594},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3372787833213806},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14558923244476318},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.061472803354263306},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.05881693959236145}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.15388/24-infor558","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15388/24-infor558","pdf_url":"https://informatica.vu.lt/journal/INFORMATICA/article/1335/file/pdf","source":{"id":"https://openalex.org/S57195646","display_name":"Informatica","issn_l":"0868-4952","issn":["0868-4952","1822-8844"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatica","raw_type":"journal-article"},{"id":"pmh:oai:repositorio.ual.es:10835/20264","is_oa":true,"landing_page_url":"http://hdl.handle.net/10835/20264","pdf_url":"https://repositorio.ual.es/bitstream/10835/20264/1/ALMERIA_Informatics.pdf","source":{"id":"https://openalex.org/S4306400756","display_name":"Repositorio de Patentes de la Universidad de Almer\u00eda (Universidad de Almer\u00eda)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.15388/24-infor558","is_oa":true,"landing_page_url":"http://dx.doi.org/10.15388/24-infor558","pdf_url":"https://informatica.vu.lt/journal/INFORMATICA/article/1335/file/pdf","source":{"id":"https://openalex.org/S57195646","display_name":"Informatica","issn_l":"0868-4952","issn":["0868-4952","1822-8844"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatica","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1554683258","display_name":null,"funder_award_id":"PID2021-123278OB-I00","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G451917667","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5967599077","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6275771172","display_name":null,"funder_award_id":"UAL18-TIC-A020-B","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396899087.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1678356000","https://openalex.org/W1968319881","https://openalex.org/W1983478747","https://openalex.org/W2033757486","https://openalex.org/W2078374001","https://openalex.org/W2120898782","https://openalex.org/W2156077095","https://openalex.org/W2241011319","https://openalex.org/W2295598076","https://openalex.org/W2325310505","https://openalex.org/W2412446857","https://openalex.org/W2749279690","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2803094965","https://openalex.org/W2901476322","https://openalex.org/W2902820054","https://openalex.org/W2911964244","https://openalex.org/W2914137508","https://openalex.org/W2926696222","https://openalex.org/W2949676527","https://openalex.org/W3030018498","https://openalex.org/W3045522182","https://openalex.org/W3087358630","https://openalex.org/W3104508774","https://openalex.org/W3111356309","https://openalex.org/W3157142404","https://openalex.org/W3157853087","https://openalex.org/W3158002239","https://openalex.org/W3171050817","https://openalex.org/W3174664347","https://openalex.org/W3198212015","https://openalex.org/W3198294617","https://openalex.org/W3202141932","https://openalex.org/W3210813272","https://openalex.org/W4214868967","https://openalex.org/W6929148780"],"related_works":["https://openalex.org/W2246257933","https://openalex.org/W2774375126","https://openalex.org/W2952156737","https://openalex.org/W2064069888","https://openalex.org/W2027195983","https://openalex.org/W2185877537","https://openalex.org/W2585571705","https://openalex.org/W2067869703","https://openalex.org/W3082059448","https://openalex.org/W4313640622"],"abstract_inverted_index":{"This":[0],"work":[1],"introduces":[2],"ALMERIA,":[3],"a":[4,45],"decision-support":[5],"tool":[6,68],"for":[7],"drug":[8],"discovery.":[9],"It":[10],"estimates":[11],"compound":[12],"similarities":[13],"and":[14,29,90],"predicts":[15],"activity,":[16],"considering":[17],"conformation":[18,93],"variability.":[19],"The":[20,67],"methodology":[21],"spans":[22],"from":[23],"data":[24,38,58,88],"preparation":[25],"to":[26,60],"model":[27],"selection":[28],"optimization.":[30],"Implemented":[31],"using":[32,49],"scalable":[33],"software,":[34],"it":[35],"handles":[36],"large":[37],"volumes":[39],"swiftly.":[40],"Experiments":[41],"were":[42,54],"conducted":[43],"on":[44,56],"distributed":[46],"computer":[47],"cluster":[48],"the":[50,86],"DUD-E":[51],"database.":[52],"Models":[53],"evaluated":[55],"different":[57],"partitions":[59],"assess":[61],"generalization":[62,83],"ability":[63],"with":[64],"new":[65],"compounds.":[66],"demonstrates":[69],"excellent":[70],"performance":[71],"in":[72],"molecular":[73],"activity":[74],"prediction":[75],"(ROC":[76],"AUC:":[77],"0.99,":[78],"0.96,":[79],"0.87),":[80],"indicating":[81],"good":[82],"properties":[84],"of":[85],"chosen":[87],"representation":[89],"modelling.":[91],"Molecular":[92],"sensitivity":[94],"is":[95],"also":[96],"evaluated.":[97]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-12-26T23:08:49.675405","created_date":"2025-10-10T00:00:00"}
