{"id":"https://openalex.org/W4226226167","doi":"https://doi.org/10.15302/j-qb-021-0285","title":"Applications of image analysis in plant chromosome and chromatin structure study","display_name":"Applications of image analysis in plant chromosome and chromatin structure study","publication_year":2022,"publication_date":"2022-03-16","ids":{"openalex":"https://openalex.org/W4226226167","doi":"https://doi.org/10.15302/j-qb-021-0285"},"language":"en","primary_location":{"id":"doi:10.15302/j-qb-021-0285","is_oa":true,"landing_page_url":"https://doi.org/10.15302/j-qb-021-0285","pdf_url":null,"source":{"id":"https://openalex.org/S4210172333","display_name":"Quantitative Biology","issn_l":"2095-4689","issn":["2095-4689","2095-4697"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.15302/j-qb-021-0285","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090719299","display_name":"Nobuko Ohmido","orcid":"https://orcid.org/0000-0003-1496-6597"},"institutions":[{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Nobuko Ohmido","raw_affiliation_strings":["<!--1--> Graduate School of Human Development and Environment Kobe University Kobe 657\u20108501 Japan","1. Graduate School of Human Development and Environment, Kobe University, Kobe 657-8501, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"<!--1--> Graduate School of Human Development and Environment Kobe University Kobe 657\u20108501 Japan","institution_ids":["https://openalex.org/I65837984"]},{"raw_affiliation_string":"1. Graduate School of Human Development and Environment, Kobe University, Kobe 657-8501, Japan","institution_ids":["https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026448779","display_name":"Astari Dwiranti","orcid":"https://orcid.org/0000-0002-0105-2748"},"institutions":[{"id":"https://openalex.org/I29617571","display_name":"University of Indonesia","ror":"https://ror.org/0116zj450","country_code":"ID","type":"education","lineage":["https://openalex.org/I29617571"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Astari Dwiranti","raw_affiliation_strings":["<!--2--> Cellular and Molecular Mechanisms in Biological System (CEMBIOS) Research Group Department of Biology Faculty of Mathematics and Natural Sciences Universitas Indonesia Depok Campus West Java 16424 Indonesia","2. Cellular and Molecular Mechanisms in Biological System (CEMBIOS) Research Group, Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok Campus, West Java 16424, Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"<!--2--> Cellular and Molecular Mechanisms in Biological System (CEMBIOS) Research Group Department of Biology Faculty of Mathematics and Natural Sciences Universitas Indonesia Depok Campus West Java 16424 Indonesia","institution_ids":["https://openalex.org/I29617571"]},{"raw_affiliation_string":"2. Cellular and Molecular Mechanisms in Biological System (CEMBIOS) Research Group, Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Depok Campus, West Java 16424, Indonesia","institution_ids":["https://openalex.org/I29617571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033840272","display_name":"Seiji Kato","orcid":"https://orcid.org/0000-0001-7597-0886"},"institutions":[{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Seiji Kato","raw_affiliation_strings":["<!--1--> Graduate School of Human Development and Environment Kobe University Kobe 657\u20108501 Japan","1. Graduate School of Human Development and Environment, Kobe University, Kobe 657-8501, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"<!--1--> Graduate School of Human Development and Environment Kobe University Kobe 657\u20108501 Japan","institution_ids":["https://openalex.org/I65837984"]},{"raw_affiliation_string":"1. Graduate School of Human Development and Environment, Kobe University, Kobe 657-8501, Japan","institution_ids":["https://openalex.org/I65837984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101567872","display_name":"Kiichi Fukui","orcid":"https://orcid.org/0000-0002-9156-819X"},"institutions":[{"id":"https://openalex.org/I11381156","display_name":"Osaka Gakuin University","ror":"https://ror.org/04a8t1e98","country_code":"JP","type":"education","lineage":["https://openalex.org/I11381156"]},{"id":"https://openalex.org/I90237989","display_name":"Osaka University of Pharmaceutical Sciences","ror":"https://ror.org/029yaft79","country_code":"JP","type":"education","lineage":["https://openalex.org/I90237989"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kiichi Fukui","raw_affiliation_strings":["<!--3--> Graduate School of Pharmaceutical Sciences Osaka University Suita Osaka 565\u20100871 Japan","3. Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka 565-0871, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"<!--3--> Graduate School of Pharmaceutical Sciences Osaka University Suita Osaka 565\u20100871 Japan","institution_ids":["https://openalex.org/I98285908","https://openalex.org/I90237989","https://openalex.org/I11381156"]},{"raw_affiliation_string":"3. Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01942458,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"3","first_page":"226","last_page":"238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12828","display_name":"Plant Genetic and Mutation Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10240","display_name":"Plant tissue culture and regeneration","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7947876453399658},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6267675757408142},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.5538312196731567},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5503045916557312},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5347259044647217},{"id":"https://openalex.org/keywords/heterochromatin","display_name":"Heterochromatin","score":0.494961678981781},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4642190933227539},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.36074525117874146},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.21941640973091125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1721496880054474}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7947876453399658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6267675757408142},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.5538312196731567},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5503045916557312},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5347259044647217},{"id":"https://openalex.org/C103435993","wikidata":"https://www.wikidata.org/wiki/Q837783","display_name":"Heterochromatin","level":4,"score":0.494961678981781},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4642190933227539},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.36074525117874146},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.21941640973091125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1721496880054474}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.15302/j-qb-021-0285","is_oa":true,"landing_page_url":"https://doi.org/10.15302/j-qb-021-0285","pdf_url":null,"source":{"id":"https://openalex.org/S4210172333","display_name":"Quantitative Biology","issn_l":"2095-4689","issn":["2095-4689","2095-4697"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative Biology","raw_type":"journal-article"},{"id":"pmh:oai:da.lib.kobe-u.ac.jp:20.500.14094/0100477527","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.14094/0100477527","pdf_url":null,"source":{"id":"https://openalex.org/S4306401924","display_name":"Kobe University Repository Kernel (Kobe University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I65837984","host_organization_name":"Kobe University","host_organization_lineage":["https://openalex.org/I65837984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Quantitative Biology\u300010(3), 226-238","raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:a9c0e728f573431b8432826a3814d74d","is_oa":true,"landing_page_url":"https://doaj.org/article/a9c0e728f573431b8432826a3814d74d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Quantitative Biology, Vol 10, Iss 3, Pp 226-238 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.15302/j-qb-021-0285","is_oa":true,"landing_page_url":"https://doi.org/10.15302/j-qb-021-0285","pdf_url":null,"source":{"id":"https://openalex.org/S4210172333","display_name":"Quantitative Biology","issn_l":"2095-4689","issn":["2095-4689","2095-4697"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Quantitative Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5099999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320322616","display_name":"Mitsubishi Foundation","ror":"https://ror.org/02y2f3e22"},{"id":"https://openalex.org/F4320338124","display_name":"Strategic International Collaborative Research Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":85,"referenced_works":["https://openalex.org/W45396841","https://openalex.org/W59526863","https://openalex.org/W1552847195","https://openalex.org/W1971613837","https://openalex.org/W1980390757","https://openalex.org/W1980774506","https://openalex.org/W1982249684","https://openalex.org/W1984945749","https://openalex.org/W1985609636","https://openalex.org/W1988738906","https://openalex.org/W1989955580","https://openalex.org/W1994300565","https://openalex.org/W1998408495","https://openalex.org/W1998786411","https://openalex.org/W2006527961","https://openalex.org/W2006944151","https://openalex.org/W2009147381","https://openalex.org/W2012495941","https://openalex.org/W2013069384","https://openalex.org/W2013203014","https://openalex.org/W2013701608","https://openalex.org/W2014038908","https://openalex.org/W2019170966","https://openalex.org/W2020973490","https://openalex.org/W2026207917","https://openalex.org/W2028573435","https://openalex.org/W2029855429","https://openalex.org/W2029873987","https://openalex.org/W2033611576","https://openalex.org/W2035639883","https://openalex.org/W2042254890","https://openalex.org/W2042501964","https://openalex.org/W2047633001","https://openalex.org/W2048920136","https://openalex.org/W2051493337","https://openalex.org/W2055036628","https://openalex.org/W2059725199","https://openalex.org/W2063287758","https://openalex.org/W2063452461","https://openalex.org/W2076311618","https://openalex.org/W2080117937","https://openalex.org/W2080693057","https://openalex.org/W2084250387","https://openalex.org/W2088534877","https://openalex.org/W2102049511","https://openalex.org/W2102707425","https://openalex.org/W2106630824","https://openalex.org/W2110030512","https://openalex.org/W2113643663","https://openalex.org/W2116902306","https://openalex.org/W2120107466","https://openalex.org/W2128605601","https://openalex.org/W2129096780","https://openalex.org/W2130625589","https://openalex.org/W2135890225","https://openalex.org/W2138111410","https://openalex.org/W2138825607","https://openalex.org/W2139068863","https://openalex.org/W2140964058","https://openalex.org/W2147728748","https://openalex.org/W2156155065","https://openalex.org/W2156447791","https://openalex.org/W2164087442","https://openalex.org/W2164938051","https://openalex.org/W2166664936","https://openalex.org/W2167128631","https://openalex.org/W2184758153","https://openalex.org/W2467628122","https://openalex.org/W2509382806","https://openalex.org/W2559652912","https://openalex.org/W2594706266","https://openalex.org/W2595710625","https://openalex.org/W2605714104","https://openalex.org/W2920913887","https://openalex.org/W2921975484","https://openalex.org/W2939970743","https://openalex.org/W2954684761","https://openalex.org/W2980008431","https://openalex.org/W2993694407","https://openalex.org/W3004985820","https://openalex.org/W3030245050","https://openalex.org/W3087583469","https://openalex.org/W3096074721","https://openalex.org/W3132924031","https://openalex.org/W6652546613"],"related_works":["https://openalex.org/W2081081709","https://openalex.org/W2795381262","https://openalex.org/W2807982188","https://openalex.org/W4210507152","https://openalex.org/W2134863169","https://openalex.org/W2118335835","https://openalex.org/W1903452812","https://openalex.org/W2767520365","https://openalex.org/W3173887840","https://openalex.org/W1978992677"],"abstract_inverted_index":{"Background":[0],"The":[1,91,173],"use":[2],"of":[3,10,19,32,46,69,94,106,140,161,165,205,214,222,228,244],"image":[4,146,189,208,231],"analysis":[5,147,190,209,232],"to":[6,16,39,180,210,236],"understand":[7],"the":[8,17,30,35,40,44,64,67,80,117,123,136,141,149,158,188,203,212,226,242],"structure":[9,31,160,213],"chromosome":[11,27,83,184,215],"and":[12,22,29,43,49,79,109,119,182,185,197,216,225],"chromatin":[13,33,166,186],"is":[14,234],"critical":[15],"study":[18,45,221],"genetic":[20,70,89,101],"evolution":[21],"diversification.":[23],"Furthermore,":[24],"a":[25,57,76,153,238],"detailed":[26],"map":[28,84],"in":[34,51,96,122,132,176,241],"nucleus":[36],"may":[37,115,193],"contribute":[38],"plant":[41,107,124,170],"breeding":[42],"fundamental":[47],"biology":[48,224],"genetics":[50,227],"organisms.":[52],"Results":[53],"In":[54],"plants":[55,229],"with":[56,130],"fully":[58],"annotated":[59],"genome":[60,143],"project,":[61],"such":[62],"as":[63],"Leguminosae":[65],"species,":[66],"integration":[68],"information,":[71],"including":[72],"DNA":[73,127],"sequence":[74],"data,":[75],"linkage":[77],"map,":[78],"cytological":[81],"quantitative":[82],"could":[85],"further":[86],"improve":[87,198],"their":[88],"value.":[90],"numerical":[92],"parameters":[93],"chromocenters":[95],"3D":[97],"can":[98],"provide":[99],"useful":[100],"information":[102],"for":[103],"phylogenetic":[104],"studies":[105,174],"diversity":[108],"heterochromatic":[110],"markers":[111],"whose":[112],"epigenetic":[113],"changes":[114,121],"explain":[116],"developmental":[118],"environmental":[120],"genome.":[125],"Extended":[126],"fibers":[128,167],"combined":[129],"fluorescence":[131],"situ":[133],"hybridization":[134],"revealed":[135,157],"highest":[137],"spatial":[138],"resolution":[139],"obtained":[142],"structure.":[144],"Moreover,":[145],"at":[148],"nano\u2010scale":[150],"level":[151],"using":[152,187,230],"helium":[154],"ion":[155],"microscope":[156],"surface":[159],"chromatin,":[162],"which":[163,192],"consists":[164],"compacted":[168],"into":[169],"chromosomes.":[171],"Conclusions":[172],"described":[175],"this":[177],"review":[178],"sought":[179],"measure":[181],"evaluate":[183,211],"method,":[191],"reduce":[194],"measurement":[195],"time":[196],"resolution.":[199],"Further,":[200],"we":[201],"discussed":[202],"development":[204,243],"an":[206],"effective":[207,219],"chromatin.":[217],"An":[218],"application":[220],"cell":[223],"methods":[233],"expected":[235],"be":[237],"major":[239],"propeller":[240],"new":[245],"applications.":[246]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
