{"id":"https://openalex.org/W1534797499","doi":"https://doi.org/10.1515/jib-2017-0074","title":"Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0","display_name":"Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0","publication_year":2018,"publication_date":"2018-03-19","ids":{"openalex":"https://openalex.org/W1534797499","doi":"https://doi.org/10.1515/jib-2017-0074","mag":"1534797499","pmid":"https://pubmed.ncbi.nlm.nih.gov/29549707"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0074","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0074","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042765353","display_name":"Robert Sidney Cox","orcid":"https://orcid.org/0000-0002-2009-6236"},"institutions":[{"id":"https://openalex.org/I65837984","display_name":"Kobe University","ror":"https://ror.org/03tgsfw79","country_code":"JP","type":"education","lineage":["https://openalex.org/I65837984"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Robert Sidney Cox","raw_affiliation_strings":["Kobe University, Kobe, Japan","[Kobe University, Kobe, JAPAN]"],"affiliations":[{"raw_affiliation_string":"Kobe University, Kobe, Japan","institution_ids":["https://openalex.org/I65837984"]},{"raw_affiliation_string":"[Kobe University, Kobe, JAPAN]","institution_ids":["https://openalex.org/I65837984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047908665","display_name":"Curtis Madsen","orcid":"https://orcid.org/0000-0002-0254-0364"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Curtis Madsen","raw_affiliation_strings":["Boston University, Boston, MA, USA","Boston University , Boston , MA , USA"],"affiliations":[{"raw_affiliation_string":"Boston University, Boston, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Boston University , Boston , MA , USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086364805","display_name":"James Alastair McLaughlin","orcid":"https://orcid.org/0000-0002-8361-2795"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James McLaughlin","raw_affiliation_strings":["Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028414498","display_name":"Tramy Nguyen","orcid":"https://orcid.org/0000-0002-8035-0259"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tramy Nguyen","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA","University of Utah, Salt Lake City, UT, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA#TAB#","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082955901","display_name":"Nicholas Roehner","orcid":"https://orcid.org/0000-0003-4957-1552"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Roehner","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070268735","display_name":"Bryan Bartley","orcid":"https://orcid.org/0000-0002-1597-4022"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Bartley","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076963580","display_name":"Swapnil Bhatia","orcid":"https://orcid.org/0000-0003-1079-7570"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Swapnil Bhatia","raw_affiliation_strings":["Boston University, Boston, MA, USA","Boston University , Boston , MA , USA"],"affiliations":[{"raw_affiliation_string":"Boston University, Boston, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Boston University , Boston , MA , USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110841908","display_name":"Mike Bissell","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093679","display_name":"Amyris (United States)","ror":"https://ror.org/00js7c390","country_code":"US","type":"company","lineage":["https://openalex.org/I4210093679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mike Bissell","raw_affiliation_strings":["Amyris, Inc., Emeryville, CA, USA"],"affiliations":[{"raw_affiliation_string":"Amyris, Inc., Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210093679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057992451","display_name":"Kevin Clancy","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142480","display_name":"Thermo Fisher Scientific (United States)","ror":"https://ror.org/03x1ewr52","country_code":"US","type":"company","lineage":["https://openalex.org/I4210142480"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Clancy","raw_affiliation_strings":["Thermo Fisher Scientific, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"Thermo Fisher Scientific, San Diego, CA, USA","institution_ids":["https://openalex.org/I4210142480"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000195963","display_name":"Thomas E. Gorochowski","orcid":"https://orcid.org/0000-0003-1702-786X"},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Gorochowski","raw_affiliation_strings":["University of Bristol, Bristol, United Kingdom of Great Britain and Northern Ireland","University of Bristol , Bristol, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"University of Bristol, Bristol, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I36234482"]},{"raw_affiliation_string":"University of Bristol , Bristol, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037127624","display_name":"Raik Gr\u00fcnberg","orcid":"https://orcid.org/0000-0001-9532-6043"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Raik Gr\u00fcnberg","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), BESE, Thuwal 23955 - 6900, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), BESE, Thuwal 23955 - 6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026945351","display_name":"Augustin Luna","orcid":"https://orcid.org/0000-0001-5709-371X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Augustin Luna","raw_affiliation_strings":["Harvard Medical School, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112438594","display_name":"Nicolas Le Nov\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Le Nov\u00e8re","raw_affiliation_strings":["Babraham Institute, Cambridge, Cambridgeshire, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Babraham Institute, Cambridge, Cambridgeshire, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109242321","display_name":"Matthew Pocock","orcid":null},"institutions":[{"id":"https://openalex.org/I125680101","display_name":"Turing Institute","ror":"https://ror.org/02x2mw849","country_code":"GB","type":"facility","lineage":["https://openalex.org/I125680101"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Pocock","raw_affiliation_strings":["Turing Ate My Hamster, Ltd., Newcastle, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Turing Ate My Hamster, Ltd., Newcastle, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I125680101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044484291","display_name":"Herbert M. Sauro","orcid":"https://orcid.org/0000-0002-3659-6817"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herbert Sauro","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030929267","display_name":"John T. Sexton","orcid":"https://orcid.org/0000-0002-7350-2680"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John T. Sexton","raw_affiliation_strings":["Rice University, Houston, TX, USA","Rice Univ., Houston, TX, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Rice University, Houston, TX, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice Univ., Houston, TX, USA#TAB#","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086007559","display_name":"Guy\u2010Bart Stan","orcid":"https://orcid.org/0000-0002-5560-902X"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Guy-Bart Stan","raw_affiliation_strings":["Imperial College, London, United Kingdom of Great Britain and Northern Ireland","Imperial College London, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Imperial College, London, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004936955","display_name":"Jeffrey J. Tabor","orcid":"https://orcid.org/0000-0001-7316-0361"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey J. Tabor","raw_affiliation_strings":["Rice University, Houston, TX, USA","Rice Univ., Houston, TX, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Rice University, Houston, TX, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Rice Univ., Houston, TX, USA#TAB#","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028170615","display_name":"Christopher A. Voigt","orcid":"https://orcid.org/0000-0002-8271-8723"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher A. Voigt","raw_affiliation_strings":["Massachusetts Institute of Technology, Cambridge, MA, USA","Massachusetts Institute of Technology; ,; Cambridge MA USA"],"affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Massachusetts Institute of Technology; ,; Cambridge MA USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072564435","display_name":"Zach Zundel","orcid":"https://orcid.org/0000-0003-1355-6721"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zach Zundel","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA","University of Utah, Salt Lake City, UT, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA#TAB#","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Myers","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA","University of Utah, Salt Lake City, UT, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA#TAB#","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020446837","display_name":"Jacob Beal","orcid":"https://orcid.org/0000-0002-1663-5102"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Beal","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Anil Wipat","raw_affiliation_strings":["Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":23,"corresponding_author_ids":["https://openalex.org/A5089978830"],"corresponding_institution_ids":["https://openalex.org/I84884186"],"apc_list":null,"apc_paid":null,"fwci":3.2574,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.92984839,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7301220893859863},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.6732340455055237},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5790489912033081},{"id":"https://openalex.org/keywords/visual-language","display_name":"Visual language","score":0.5208052396774292},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.45617198944091797},{"id":"https://openalex.org/keywords/diagram","display_name":"Diagram","score":0.4390987455844879},{"id":"https://openalex.org/keywords/symbol","display_name":"Symbol (formal)","score":0.42407912015914917},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4018056392669678},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3333260416984558},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19726109504699707},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1891764998435974},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.09996026754379272}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7301220893859863},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.6732340455055237},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5790489912033081},{"id":"https://openalex.org/C2780878386","wikidata":"https://www.wikidata.org/wiki/Q1659648","display_name":"Visual language","level":2,"score":0.5208052396774292},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.45617198944091797},{"id":"https://openalex.org/C186399060","wikidata":"https://www.wikidata.org/wiki/Q959962","display_name":"Diagram","level":2,"score":0.4390987455844879},{"id":"https://openalex.org/C134400042","wikidata":"https://www.wikidata.org/wiki/Q2372244","display_name":"Symbol (formal)","level":2,"score":0.42407912015914917},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4018056392669678},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3333260416984558},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19726109504699707},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1891764998435974},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.09996026754379272},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":13,"locations":[{"id":"doi:10.1515/jib-2017-0074","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0074","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29549707","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29549707","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmid:34668358","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34668358","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5327983","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167035","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8560346","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8560346","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:research-information.bris.ac.uk:openaire/945a8cb2-989b-407e-8691-67602e73c471","is_oa":false,"landing_page_url":"https://research-information.bris.ac.uk/en/publications/945a8cb2-989b-407e-8691-67602e73c471","pdf_url":null,"source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cox, R S, Madsen, C, McLaughlin, J, Nguyen, T, Roehner, N, Bartley, B, Bhatia, S, Bissell, M, Clancy, K, Gorochowski, T, Grunberg, R, Luna, A, Le Novere, N, Pocock, M, Sauro, H, Sexton, J T, Stan, G-B, Tabor, J J, Voigt, C, Zundel, Z, Myers, C, Beal, J & Wipat, A 2018, 'Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0', Journal of Integrative Bioinformatics. https://doi.org/10.1515/jib-2017-0074","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:research-information.bris.ac.uk:publications/7d3f7de8-e0a1-418d-95cf-5e31a1d971fd","is_oa":true,"landing_page_url":null,"pdf_url":"https://research-information.bris.ac.uk/en/publications/7d3f7de8-e0a1-418d-95cf-5e31a1d971fd","source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:research-information.bris.ac.uk:publications/945a8cb2-989b-407e-8691-67602e73c471","is_oa":true,"landing_page_url":"https://hdl.handle.net/1983/945a8cb2-989b-407e-8691-67602e73c471","pdf_url":"https://research-information.bris.ac.uk/en/publications/945a8cb2-989b-407e-8691-67602e73c471","source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:e8c233cba7dc4e0ab39a925c975a23d0","is_oa":true,"landing_page_url":"https://doaj.org/article/e8c233cba7dc4e0ab39a925c975a23d0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)","raw_type":"article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/627544","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/627544","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:research-information.bris.ac.uk:publications/237b0515-d2af-428e-a91a-2885422f4d60","is_oa":true,"landing_page_url":"https://hdl.handle.net/1983/237b0515-d2af-428e-a91a-2885422f4d60","pdf_url":null,"source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:scholarship.rice.edu:1911/102482","is_oa":true,"landing_page_url":"http://hdl.handle.net/1911/102482","pdf_url":null,"source":{"id":"https://openalex.org/S4306400220","display_name":"Rice University's digital scholarship archive (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/56717","is_oa":false,"landing_page_url":"http://hdl.handle.net/10044/1/56717","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0074","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0074","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.75,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1511075568","display_name":null,"funder_award_id":"EP/M002187/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1534797499.pdf","grobid_xml":"https://content.openalex.org/works/W1534797499.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W6779531965","https://openalex.org/W2145435867","https://openalex.org/W2123171788","https://openalex.org/W2069157810"],"related_works":["https://openalex.org/W2389793738","https://openalex.org/W2376208682","https://openalex.org/W4246219814","https://openalex.org/W4240806619","https://openalex.org/W2368886944","https://openalex.org/W4254609622","https://openalex.org/W4390358280","https://openalex.org/W2611966483","https://openalex.org/W2392641092","https://openalex.org/W3099929025"],"abstract_inverted_index":{"People":[0],"who":[1],"are":[2,25],"engineering":[3,26],"biological":[4],"organisms":[5],"often":[6],"find":[7],"it":[8],"useful":[9],"to":[10,46,73,108],"communicate":[11],"in":[12,71],"diagrams,":[13],"both":[14],"about":[15,28],"the":[16,19,29,80,98,116,121,142],"structure":[17,81],"of":[18,84,92,128,134,144],"nucleic":[20],"acid":[21],"sequences":[22],"that":[23],"they":[24],"and":[27,35,42,67,82,112,120,136,139],"functional":[30,110],"relationships":[31],"between":[32,118],"sequence":[33],"features":[34],"other":[36],"molecular":[37,113],"species.":[38],"Some":[39],"typical":[40],"practices":[41],"conventions":[43,70],"have":[44],"begun":[45],"emerge":[47],"for":[48,65,78],"such":[49,69],"diagrams.":[50],"The":[51],"Synthetic":[52],"Biology":[53],"Open":[54],"Language":[55],"Visual":[56,101],"(SBOL":[57],"Visual)":[58],"has":[59],"been":[60],"developed":[61],"as":[62],"a":[63,75,132],"standard":[64,103],"organizing":[66],"systematizing":[68],"order":[72],"produce":[74],"coherent":[76],"language":[77],"expressing":[79],"function":[83],"genetic":[85],"designs.":[86],"This":[87],"document":[88],"details":[89],"version":[90],"2.0":[91],"SBOL":[93,100,122],"Visual,":[94],"which":[95],"builds":[96],"on":[97],"prior":[99],"1.0":[102],"by":[104],"expanding":[105,141],"diagram":[106,145],"syntax":[107],"include":[109],"interactions":[111],"species,":[114],"making":[115],"relationship":[117],"diagrams":[119],"data":[123],"model":[124],"explicit,":[125],"supporting":[126],"families":[127],"symbol":[129],"variants,":[130],"clarifying":[131],"number":[133],"requirements":[135],"best":[137],"practices,":[138],"significantly":[140],"collection":[143],"glyphs.":[146]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2016-06-24T00:00:00"}
