{"id":"https://openalex.org/W2807740149","doi":"https://doi.org/10.1515/jib-2017-0063","title":"<i>BioSankey</i> : Visualization of Microbial Communities Over Time","display_name":"<i>BioSankey</i> : Visualization of Microbial Communities Over Time","publication_year":2018,"publication_date":"2018-06-13","ids":{"openalex":"https://openalex.org/W2807740149","doi":"https://doi.org/10.1515/jib-2017-0063","mag":"2807740149","pmid":"https://pubmed.ncbi.nlm.nih.gov/29897884"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0063","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0063","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/4/article-20170063.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/4/article-20170063.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066509741","display_name":"Alexander Platzer","orcid":"https://orcid.org/0000-0002-2318-8806"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Alexander Platzer","raw_affiliation_strings":["University Clinic for Internal Medicine III , Medical University of Vienna , Vienna , Austria"],"affiliations":[{"raw_affiliation_string":"University Clinic for Internal Medicine III , Medical University of Vienna , Vienna , Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018948483","display_name":"Julia Polzin","orcid":"https://orcid.org/0000-0003-3450-4525"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Julia Polzin","raw_affiliation_strings":["Division of Microbial Ecology , Department of Microbial Ecology , University of Vienna , Vienna , Austria"],"affiliations":[{"raw_affiliation_string":"Division of Microbial Ecology , Department of Microbial Ecology , University of Vienna , Vienna , Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012248177","display_name":"Klaus Rembart","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Klaus Rembart","raw_affiliation_strings":["Division of Computational System Biology , Department of Microbiology and Ecosystem Science , University of Vienna , 1090 Vienna , Austria"],"affiliations":[{"raw_affiliation_string":"Division of Computational System Biology , Department of Microbiology and Ecosystem Science , University of Vienna , 1090 Vienna , Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066814965","display_name":"Ping Han","orcid":"https://orcid.org/0000-0001-6025-1651"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Ping Penny Han","raw_affiliation_strings":["Division of Microbial Ecology , Department of Microbial Ecology , University of Vienna , Vienna , Austria"],"affiliations":[{"raw_affiliation_string":"Division of Microbial Ecology , Department of Microbial Ecology , University of Vienna , Vienna , Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025425195","display_name":"Denise Rauer","orcid":null},"institutions":[{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Denise Rauer","raw_affiliation_strings":["Institute of Environmental Medicine UNIKAT, Technical University and Helmholtz Center Munich , Augsburg , Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Environmental Medicine UNIKAT, Technical University and Helmholtz Center Munich , Augsburg , Germany","institution_ids":["https://openalex.org/I179225836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039331758","display_name":"Thomas Nu\u00dfbaumer","orcid":"https://orcid.org/0000-0003-4922-1966"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I179225836","display_name":"University of Augsburg","ror":"https://ror.org/03p14d497","country_code":"DE","type":"education","lineage":["https://openalex.org/I179225836"]}],"countries":["AT","DE"],"is_corresponding":true,"raw_author_name":"Thomas Nussbaumer","raw_affiliation_strings":["Division of Computational System Biology , Department of Microbiology and Ecosystem Science , University of Vienna , 1090 Vienna , Austria","Institute of Environmental Medicine UNIKAT, Technical University and Helmholtz Center Munich , Augsburg , Germany","Institute of Network Biology (INET), Helmholtz Center Munich , Ingolst\u00e4dter Landstra\u00dfe 1 , 85764 Neuherberg , Germany"],"affiliations":[{"raw_affiliation_string":"Division of Computational System Biology , Department of Microbiology and Ecosystem Science , University of Vienna , 1090 Vienna , Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Institute of Environmental Medicine UNIKAT, Technical University and Helmholtz Center Munich , Augsburg , Germany","institution_ids":["https://openalex.org/I179225836"]},{"raw_affiliation_string":"Institute of Network Biology (INET), Helmholtz Center Munich , Ingolst\u00e4dter Landstra\u00dfe 1 , 85764 Neuherberg , Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5039331758","https://openalex.org/A5066509741"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I179225836","https://openalex.org/I76134821"],"apc_list":null,"apc_paid":null,"fwci":0.7745,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.8163522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"15","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6895602345466614},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6235219240188599},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25898635387420654}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6895602345466614},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6235219240188599},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25898635387420654}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1515/jib-2017-0063","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0063","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/4/article-20170063.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29897884","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29897884","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:push-zb.helmholtz-munich.de:53649","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=53649","pdf_url":"https://push-zb.helmholtz-munich.de/deliver.php?id=21981","source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J. Integr. Bioinform. 15:20170063 (2018)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:4cac41ab44af4cdcb5ab5c696347387d","is_oa":true,"landing_page_url":"https://doaj.org/article/4cac41ab44af4cdcb5ab5c696347387d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 4, Pp 385-86 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5329212","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6348749","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:uni-augsburg.opus-bayern.de:82285","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:bvb:384-opus4-822856","pdf_url":null,"source":{"id":"https://openalex.org/S4306400930","display_name":"OPUS (Augsburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119916105","host_organization_name":"Augsburg University","host_organization_lineage":["https://openalex.org/I119916105"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0063","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0063","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/4/article-20170063.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2807740149.pdf","grobid_xml":"https://content.openalex.org/works/W2807740149.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1491957424","https://openalex.org/W1870496269","https://openalex.org/W1878521557","https://openalex.org/W2011301426","https://openalex.org/W2021341670","https://openalex.org/W2034285706","https://openalex.org/W2040100465","https://openalex.org/W2072970694","https://openalex.org/W2084590843","https://openalex.org/W2085926377","https://openalex.org/W2103017472","https://openalex.org/W2103901746","https://openalex.org/W2108718991","https://openalex.org/W2116851038","https://openalex.org/W2116895571","https://openalex.org/W2126218947","https://openalex.org/W2129744420","https://openalex.org/W2133790733","https://openalex.org/W2147526198","https://openalex.org/W2158804744","https://openalex.org/W2159482845","https://openalex.org/W2179283465","https://openalex.org/W2336330109","https://openalex.org/W2344467057","https://openalex.org/W2401191482","https://openalex.org/W2543375671","https://openalex.org/W2749936057","https://openalex.org/W4294216483","https://openalex.org/W4399649310"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3124914020","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857"],"abstract_inverted_index":{"Metagenomics":[0],"provides":[1],"quantitative":[2],"measurements":[3],"for":[4],"microbial":[5,40],"species":[6,41,72],"over":[7,45],"time.":[8],"To":[9],"obtain":[10],"a":[11,24,48,56,75,81,85,102],"global":[12],"overview":[13],"of":[14,23,70,105],"an":[15],"experiment":[16],"and":[17,28,64,99],"to":[18,38,67,80,88],"explore":[19],"the":[20],"full":[21],"potential":[22],"given":[25],"dataset,":[26],"intuitive":[27],"interactive":[29],"visualization":[30],"tools":[31],"are":[32,53],"needed.":[33],"Therefore,":[34],"we":[35],"established":[36],"BioSankey":[37,83],"visualize":[39,89],"in":[42],"microbiome":[43],"studies":[44],"time":[46],"as":[47],"Sankey":[49],"diagram.":[50],"These":[51],"diagrams":[52],"embedded":[54],"into":[55],"project-specific":[57],"webpage":[58],"which":[59],"depends":[60],"only":[61],"on":[62],"JavaScript":[63],"Google":[65],"API":[66],"allow":[68],"searches":[69],"interesting":[71],"without":[73],"requiring":[74],"web":[76],"server":[77],"or":[78,95],"connection":[79],"database.":[82],"is":[84],"valuable":[86],"tool":[87],"different":[90],"data":[91],"elements":[92],"from":[93],"single":[94],"dual":[96],"RNA-seq":[97],"datasets":[98],"additionally":[100],"enables":[101],"straightforward":[103],"exchange":[104],"results":[106],"among":[107],"collaboration":[108],"partners.":[109]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2018-06-21T00:00:00"}