{"id":"https://openalex.org/W3045797661","doi":"https://doi.org/10.1515/mathm-2020-0100","title":"Automated segmentation of thick confocal microscopy 3D images for the measurement of white matter volumes in zebrafish brains","display_name":"Automated segmentation of thick confocal microscopy 3D images for the measurement of white matter volumes in zebrafish brains","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3045797661","doi":"https://doi.org/10.1515/mathm-2020-0100","mag":"3045797661"},"language":"en","primary_location":{"id":"doi:10.1515/mathm-2020-0100","is_oa":true,"landing_page_url":"https://doi.org/10.1515/mathm-2020-0100","pdf_url":"https://www.degruyter.com/downloadpdf/journals/mathm/4/1/article-p31.pdf","source":{"id":"https://openalex.org/S4210194781","display_name":"Mathematical Morphology - Theory and Applications","issn_l":"2353-3390","issn":["2353-3390"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Morphology - Theory and Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.degruyter.com/downloadpdf/journals/mathm/4/1/article-p31.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050124961","display_name":"Sylvain Lempereur","orcid":"https://orcid.org/0000-0003-3976-7148"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Sylvain Lempereur","raw_affiliation_strings":["LIGM, Univ Gustave Eiffel , CNRS, ESIEE Paris, F-77454 Marne-la-Vall\u00e9e , France ,; Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIGM, Univ Gustave Eiffel , CNRS, ESIEE Paris, F-77454 Marne-la-Vall\u00e9e , France ,; Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210152518","https://openalex.org/I4210154111"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104437073","display_name":"Arnim Jenett","orcid":"https://orcid.org/0000-0003-3039-2060"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Arnim Jenett","raw_affiliation_strings":["Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029637626","display_name":"Elodie Machado","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elodie Machado","raw_affiliation_strings":["Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021284069","display_name":"Ignacio Arganda\u2010Carreras","orcid":"https://orcid.org/0000-0003-0229-5722"},"institutions":[{"id":"https://openalex.org/I110594554","display_name":"Ikerbasque","ror":"https://ror.org/01cc3fy72","country_code":"ES","type":"other","lineage":["https://openalex.org/I110594554"]},{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]},{"id":"https://openalex.org/I47686490","display_name":"Donostia International Physics Center","ror":"https://ror.org/02e24yw40","country_code":"ES","type":"other","lineage":["https://openalex.org/I47686490"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Arganda-Carreras","raw_affiliation_strings":["Ikerbasque, Basque Foundation for Science, Bilbao, Spain, Computer Science and Artificial Intelligence Department , University of the Basque Country, San Sebastian, Spai, Donostia International Physics Center , San Sebastian , Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ikerbasque, Basque Foundation for Science, Bilbao, Spain, Computer Science and Artificial Intelligence Department , University of the Basque Country, San Sebastian, Spai, Donostia International Physics Center , San Sebastian , Spain","institution_ids":["https://openalex.org/I110594554","https://openalex.org/I169108374","https://openalex.org/I47686490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008498203","display_name":"Matthieu Simion","orcid":"https://orcid.org/0009-0001-8235-5299"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Matthieu Simion","raw_affiliation_strings":["Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012387017","display_name":"Pierre Affaticati","orcid":"https://orcid.org/0000-0001-9872-395X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Affaticati","raw_affiliation_strings":["Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112155526","display_name":"Jean\u2010St\u00e9phane Joly","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-St\u00e9phane Joly","raw_affiliation_strings":["Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tefor Paris-Saclay, UMS2010, CNRS/INRA, Universit\u00e9 Paris-Saclay , Gif sur Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002452272","display_name":"Hugues Talbot","orcid":"https://orcid.org/0000-0002-2179-3498"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107720","display_name":"CentraleSup\u00e9lec","ror":"https://ror.org/019tcpt25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210107720"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hugues Talbot","raw_affiliation_strings":["LIGM, Univ Gustave Eiffel , CNRS, ESIEE Paris, F-77454 Marne-la-Vall\u00e9e, France, Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Inria, 91190 , Gif-sur-Yvette , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIGM, Univ Gustave Eiffel , CNRS, ESIEE Paris, F-77454 Marne-la-Vall\u00e9e, France, Universit\u00e9 Paris-Saclay, CentraleSup\u00e9lec, Inria, 91190 , Gif-sur-Yvette , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210152518","https://openalex.org/I4210154111"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5050124961"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210152518","https://openalex.org/I4210154111"],"apc_list":null,"apc_paid":null,"fwci":0.1473,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.39799808,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"4","issue":"1","first_page":"31","last_page":"45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-stitching","display_name":"Image stitching","score":0.8222848176956177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6486384868621826},{"id":"https://openalex.org/keywords/white-matter","display_name":"White matter","score":0.6398543119430542},{"id":"https://openalex.org/keywords/signal","display_name":"SIGNAL (programming language)","score":0.62671959400177},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6040878295898438},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5873799324035645},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5776142477989197},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5752354860305786},{"id":"https://openalex.org/keywords/attenuation","display_name":"Attenuation","score":0.5651639699935913},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.547743558883667},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.5378019213676453},{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.46174293756484985},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4239952564239502},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38834458589553833},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.22943639755249023},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19977304339408875},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17662513256072998},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.1198943555355072}],"concepts":[{"id":"https://openalex.org/C29081049","wikidata":"https://www.wikidata.org/wiki/Q1364242","display_name":"Image stitching","level":2,"score":0.8222848176956177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6486384868621826},{"id":"https://openalex.org/C2781192897","wikidata":"https://www.wikidata.org/wiki/Q822050","display_name":"White matter","level":3,"score":0.6398543119430542},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.62671959400177},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6040878295898438},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5873799324035645},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5776142477989197},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5752354860305786},{"id":"https://openalex.org/C184652730","wikidata":"https://www.wikidata.org/wiki/Q2357982","display_name":"Attenuation","level":2,"score":0.5651639699935913},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.547743558883667},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.5378019213676453},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.46174293756484985},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4239952564239502},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38834458589553833},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.22943639755249023},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19977304339408875},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17662513256072998},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.1198943555355072},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1515/mathm-2020-0100","is_oa":true,"landing_page_url":"https://doi.org/10.1515/mathm-2020-0100","pdf_url":"https://www.degruyter.com/downloadpdf/journals/mathm/4/1/article-p31.pdf","source":{"id":"https://openalex.org/S4210194781","display_name":"Mathematical Morphology - Theory and Applications","issn_l":"2353-3390","issn":["2353-3390"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Morphology - Theory and Applications","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-03144939v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03144939","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mathematical Morphology - Theory and Applications, 2020, 4 (1), pp.31-45. &#x27E8;10.1515/mathm-2020-0100&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:dbd84836b27f4fc2bc7c7c7fb8182c65","is_oa":false,"landing_page_url":"https://doaj.org/article/dbd84836b27f4fc2bc7c7c7fb8182c65","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mathematical Morphology, Vol 4, Iss 1, Pp 31-45 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/mathm-2020-0100","is_oa":true,"landing_page_url":"https://doi.org/10.1515/mathm-2020-0100","pdf_url":"https://www.degruyter.com/downloadpdf/journals/mathm/4/1/article-p31.pdf","source":{"id":"https://openalex.org/S4210194781","display_name":"Mathematical Morphology - Theory and Applications","issn_l":"2353-3390","issn":["2353-3390"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Morphology - Theory and Applications","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1232282896","display_name":null,"funder_award_id":"ANR-II-INBS-0014","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8204813404","display_name":"Advanced eco-compatible mRNA vaccines for induction of protective immune responses in farmed fish","funder_award_id":"ANR-16-CE20-0002","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8583872585","display_name":null,"funder_award_id":"II-INBS-0014","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3045797661.pdf","grobid_xml":"https://content.openalex.org/works/W3045797661.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1932232911","https://openalex.org/W1965647283","https://openalex.org/W1983153151","https://openalex.org/W2000899261","https://openalex.org/W2026616100","https://openalex.org/W2061657453","https://openalex.org/W2071569137","https://openalex.org/W2133287637","https://openalex.org/W2345026496","https://openalex.org/W2412679964","https://openalex.org/W2464161741","https://openalex.org/W2564011550","https://openalex.org/W2607161442","https://openalex.org/W2608459997","https://openalex.org/W2762921063","https://openalex.org/W2771923282","https://openalex.org/W2827861258","https://openalex.org/W2862901921","https://openalex.org/W2894837499","https://openalex.org/W2895725541","https://openalex.org/W2896571296","https://openalex.org/W2953065309","https://openalex.org/W2971066617"],"related_works":["https://openalex.org/W68020613","https://openalex.org/W2091466534","https://openalex.org/W4255291540","https://openalex.org/W3134240150","https://openalex.org/W4387591196","https://openalex.org/W172825421","https://openalex.org/W2944699522","https://openalex.org/W3156165453","https://openalex.org/W4384702767","https://openalex.org/W1982521527"],"abstract_inverted_index":{"Abstract":[0],"Tissue":[1],"clearing":[2,23,46],"methods":[3,191],"have":[4,51],"boosted":[5],"the":[6,20,102,114,118,144,168,172,196],"microscopic":[7,48],"observations":[8,186],"of":[9,122,134,137,171],"thick":[10],"samples":[11,197],"such":[12],"as":[13,111],"whole-mount":[14],"mouse":[15],"or":[16,74],"zebrafish.":[17],"Even":[18],"with":[19,34,147],"best":[21],"tissue":[22,45],"methods,":[24],"specimens":[25,65],"are":[26],"not":[27],"completely":[28],"transparent":[29],"and":[30,39,47,104,187],"light":[31],"attenuation":[32,87],"increases":[33],"depth,":[35],"reducing":[36],"signal":[37,86,193],"output":[38],"signal-to-noise":[40,150],"ratio.":[41],"In":[42,61],"addition,":[43],"since":[44],"acquisition":[49],"techniques":[50],"become":[52],"faster,":[53],"automated":[54,178],"image":[55,143,185],"analysis":[56],"is":[57,181,198],"now":[58],"an":[59],"issue.":[60],"this":[62,128],"context,":[63],"mounting":[64],"at":[66],"large":[67],"scale":[68],"often":[69],"leads":[70],"to":[71,84,142,165,183],"imperfectly":[72],"aligned":[73],"oriented":[75],"samples,":[76],"which":[77],"makes":[78,162],"relying":[79],"on":[80,100],"predefined,":[81],"sample-independent":[82],"parameters":[83],"correct":[85],"impossible.":[88],"Here,":[89],"we":[90],"propose":[91],"a":[92,131,148],"sample-dependent":[93],"method":[94,161],"for":[95,113],"contrast":[96,159],"correction.":[97,115],"It":[98],"relies":[99],"segmenting":[101],"sample,":[103],"estimating":[105],"sample":[106],"depth":[107],"isosurfaces":[108],"that":[109,127,156],"serve":[110],"reference":[112],"We":[116,125,153],"segment":[117],"brain":[119,173],"white":[120],"matter":[121],"zebrafish":[123],"larvae.":[124],"show":[126,155],"correction":[129,160],"allows":[130],"better":[132,166],"stitching":[133],"opposite":[135],"sides":[136],"each":[138],"larva,":[139],"in":[140,189,195],"order":[141],"entire":[145],"larva":[146],"high":[149],"ratio":[151],"throughout.":[152],"also":[154],"our":[157],"proposed":[158],"it":[163],"possible":[164],"recognize":[167],"deep":[169],"structures":[170],"by":[174],"comparing":[175],"manual":[176],"vs.":[177],"segmentations.":[179],"This":[180],"expected":[182],"improve":[184],"analyses":[188],"high-content":[190],"where":[192],"loss":[194],"significant.":[199]},"counts_by_year":[{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
