{"id":"https://openalex.org/W1988072419","doi":"https://doi.org/10.1515/jisys-2013-0052","title":"A New Quantum Cuckoo Search Algorithm for Multiple Sequence Alignment","display_name":"A New Quantum Cuckoo Search Algorithm for Multiple Sequence Alignment","publication_year":2014,"publication_date":"2014-06-17","ids":{"openalex":"https://openalex.org/W1988072419","doi":"https://doi.org/10.1515/jisys-2013-0052","mag":"1988072419"},"language":"en","primary_location":{"id":"doi:10.1515/jisys-2013-0052","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jisys-2013-0052","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jisys-2013-0052/pdf","source":{"id":"https://openalex.org/S2764846071","display_name":"Journal of Intelligent Systems","issn_l":"0334-1860","issn":["0334-1860","2191-026X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315148","host_organization_name":"IlmuKomputer.Com","host_organization_lineage":["https://openalex.org/P4310315148"],"host_organization_lineage_names":["IlmuKomputer.Com"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.degruyter.com/document/doi/10.1515/jisys-2013-0052/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022567790","display_name":"Widad Kartous","orcid":null},"institutions":[{"id":"https://openalex.org/I125485651","display_name":"University Fr\u00e8res Mentouri Constantine 1","ror":"https://ror.org/017wv6808","country_code":"DZ","type":"education","lineage":["https://openalex.org/I125485651"]},{"id":"https://openalex.org/I4391767747","display_name":"University of Constantine 3","ror":"https://ror.org/04wk25q62","country_code":"DZ","type":"education","lineage":["https://openalex.org/I4391767747"]}],"countries":["DZ"],"is_corresponding":true,"raw_author_name":"Widad Kartous","raw_affiliation_strings":["MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","1MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","institution_ids":["https://openalex.org/I125485651"]},{"raw_affiliation_string":"1MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","institution_ids":["https://openalex.org/I125485651","https://openalex.org/I4391767747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016921626","display_name":"Abdesslem Layeb","orcid":"https://orcid.org/0000-0002-6553-8253"},"institutions":[{"id":"https://openalex.org/I125485651","display_name":"University Fr\u00e8res Mentouri Constantine 1","ror":"https://ror.org/017wv6808","country_code":"DZ","type":"education","lineage":["https://openalex.org/I125485651"]},{"id":"https://openalex.org/I4391767747","display_name":"University of Constantine 3","ror":"https://ror.org/04wk25q62","country_code":"DZ","type":"education","lineage":["https://openalex.org/I4391767747"]}],"countries":["DZ"],"is_corresponding":false,"raw_author_name":"Abdesslem Layeb","raw_affiliation_strings":["MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","1MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","institution_ids":["https://openalex.org/I125485651"]},{"raw_affiliation_string":"1MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","institution_ids":["https://openalex.org/I125485651","https://openalex.org/I4391767747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055982084","display_name":"Salim Ch\u0131kh\u0131","orcid":"https://orcid.org/0000-0002-8369-8533"},"institutions":[{"id":"https://openalex.org/I125485651","display_name":"University Fr\u00e8res Mentouri Constantine 1","ror":"https://ror.org/017wv6808","country_code":"DZ","type":"education","lineage":["https://openalex.org/I125485651"]},{"id":"https://openalex.org/I4391767747","display_name":"University of Constantine 3","ror":"https://ror.org/04wk25q62","country_code":"DZ","type":"education","lineage":["https://openalex.org/I4391767747"]}],"countries":["DZ"],"is_corresponding":false,"raw_author_name":"Salim Chikhi","raw_affiliation_strings":["MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","1MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","institution_ids":["https://openalex.org/I125485651"]},{"raw_affiliation_string":"1MISC Laboratory, Department of Computer Science and its applications, University of Constantine 2, Nouvelle Ville Ali Mendjeli - BP: 67A, 25000, Algeria","institution_ids":["https://openalex.org/I125485651","https://openalex.org/I4391767747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022567790"],"corresponding_institution_ids":["https://openalex.org/I125485651","https://openalex.org/I4391767747"],"apc_list":{"value":1000,"currency":"EUR","value_usd":1078},"apc_paid":{"value":1000,"currency":"EUR","value_usd":1078},"fwci":0.2792,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.57893864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"23","issue":"3","first_page":"261","last_page":"275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9550999999046326,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuckoo-search","display_name":"Cuckoo search","score":0.866066038608551},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6415359973907471},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6307508945465088},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6233108043670654},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.601035475730896},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5642014145851135},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5481002926826477},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.522072970867157},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4705035388469696},{"id":"https://openalex.org/keywords/quantum","display_name":"Quantum","score":0.45045098662376404},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4438626766204834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28595948219299316},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25117170810699463},{"id":"https://openalex.org/keywords/particle-swarm-optimization","display_name":"Particle swarm optimization","score":0.08166497945785522},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06436598300933838}],"concepts":[{"id":"https://openalex.org/C117241572","wikidata":"https://www.wikidata.org/wiki/Q5192379","display_name":"Cuckoo search","level":3,"score":0.866066038608551},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6415359973907471},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6307508945465088},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6233108043670654},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.601035475730896},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5642014145851135},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5481002926826477},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.522072970867157},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4705035388469696},{"id":"https://openalex.org/C84114770","wikidata":"https://www.wikidata.org/wiki/Q46344","display_name":"Quantum","level":2,"score":0.45045098662376404},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4438626766204834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28595948219299316},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25117170810699463},{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.08166497945785522},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06436598300933838},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1515/jisys-2013-0052","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jisys-2013-0052","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jisys-2013-0052/pdf","source":{"id":"https://openalex.org/S2764846071","display_name":"Journal of Intelligent Systems","issn_l":"0334-1860","issn":["0334-1860","2191-026X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315148","host_organization_name":"IlmuKomputer.Com","host_organization_lineage":["https://openalex.org/P4310315148"],"host_organization_lineage_names":["IlmuKomputer.Com"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent Systems","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:e0a88652db624d82a15c720f7dd1c30e","is_oa":true,"landing_page_url":"https://doaj.org/article/e0a88652db624d82a15c720f7dd1c30e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Intelligent Systems, Vol 23, Iss 3, Pp 261-275 (2014)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jisys-2013-0052","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jisys-2013-0052","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jisys-2013-0052/pdf","source":{"id":"https://openalex.org/S2764846071","display_name":"Journal of Intelligent Systems","issn_l":"0334-1860","issn":["0334-1860","2191-026X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315148","host_organization_name":"IlmuKomputer.Com","host_organization_lineage":["https://openalex.org/P4310315148"],"host_organization_lineage_names":["IlmuKomputer.Com"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent Systems","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1988072419.pdf","grobid_xml":"https://content.openalex.org/works/W1988072419.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W58814538","https://openalex.org/W181814828","https://openalex.org/W1509364972","https://openalex.org/W1694876563","https://openalex.org/W1760648215","https://openalex.org/W1783219955","https://openalex.org/W1880024786","https://openalex.org/W1937748095","https://openalex.org/W1962752774","https://openalex.org/W1965681871","https://openalex.org/W1969153299","https://openalex.org/W1976471311","https://openalex.org/W1976744965","https://openalex.org/W1986167225","https://openalex.org/W1996748160","https://openalex.org/W1998139877","https://openalex.org/W2001573278","https://openalex.org/W2008120462","https://openalex.org/W2008518635","https://openalex.org/W2018975235","https://openalex.org/W2022788172","https://openalex.org/W2035186407","https://openalex.org/W2035364028","https://openalex.org/W2044164898","https://openalex.org/W2074231493","https://openalex.org/W2090224504","https://openalex.org/W2101418959","https://openalex.org/W2102941368","https://openalex.org/W2106882534","https://openalex.org/W2108642468","https://openalex.org/W2122035121","https://openalex.org/W2132926880","https://openalex.org/W2134941776","https://openalex.org/W2140872496","https://openalex.org/W2141411672","https://openalex.org/W2144362290","https://openalex.org/W2146338925","https://openalex.org/W2148311769","https://openalex.org/W2155804170","https://openalex.org/W2163860567","https://openalex.org/W2168288736","https://openalex.org/W2169619350","https://openalex.org/W2200206430","https://openalex.org/W2739760772","https://openalex.org/W2963618366","https://openalex.org/W4285719527","https://openalex.org/W6602369343","https://openalex.org/W6630429956","https://openalex.org/W6638335597","https://openalex.org/W6644479273","https://openalex.org/W6652583579","https://openalex.org/W6652595415","https://openalex.org/W6675352169","https://openalex.org/W6681874549"],"related_works":["https://openalex.org/W1978568284","https://openalex.org/W2102833174","https://openalex.org/W2753354457","https://openalex.org/W2742451303","https://openalex.org/W2329556607","https://openalex.org/W3013665388","https://openalex.org/W2366107444","https://openalex.org/W2905415873","https://openalex.org/W4220814209","https://openalex.org/W2901222946"],"abstract_inverted_index":{"Abstract":[0],"Multiple":[1],"sequence":[2],"alignment":[3,79],"(MSA)":[4],"is":[5,57,72],"one":[6],"of":[7,25,68,75,108],"the":[8,16,30,69,73,90,104,109],"major":[9],"problems":[10],"that":[11],"can":[12],"be":[13,41],"encountered":[14],"in":[15,21],"bioinformatics":[17],"field.":[18],"MSA":[19],"consists":[20],"aligning":[22],"a":[23,46,60,76,83],"set":[24],"biological":[26],"sequences":[27],"to":[28,40,51,88],"extract":[29],"similarities":[31],"between":[32],"them.":[33],"Unfortunately,":[34],"this":[35,44,54,97],"problem":[36],"has":[37],"been":[38],"shown":[39],"NP-hard.":[42],"In":[43],"article,":[45],"new":[47],"algorithm":[48,87],"was":[49],"proposed":[50,70,110],"deal":[52],"with":[53],"problem;":[55],"it":[56],"based":[58,81],"on":[59,82],"quantum-inspired":[61],"cuckoo":[62],"search":[63],"algorithm.":[64],"The":[65,93],"other":[66],"feature":[67],"approach":[71],"use":[74],"randomized":[77],"progressive":[78],"method":[80],"hybrid":[84],"global/local":[85],"pairwise":[86],"construct":[89],"initial":[91],"population.":[92],"results":[94],"obtained":[95],"by":[96],"hybridization":[98],"are":[99],"very":[100],"encouraging":[101],"and":[102,106],"show":[103],"feasibility":[105],"effectiveness":[107],"solution.":[111]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
