{"id":"https://openalex.org/W4411466735","doi":"https://doi.org/10.1515/jib-2024-0047","title":"Leveraging transformers for semi-supervised pathogenicity prediction with soft labels","display_name":"Leveraging transformers for semi-supervised pathogenicity prediction with soft labels","publication_year":2025,"publication_date":"2025-06-01","ids":{"openalex":"https://openalex.org/W4411466735","doi":"https://doi.org/10.1515/jib-2024-0047","pmid":"https://pubmed.ncbi.nlm.nih.gov/40538169"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2024-0047","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0047","pdf_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0047/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0047/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5117297497","display_name":"Pablo Enrique Guillem","orcid":"https://orcid.org/0009-0001-5328-7661"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pablo Enrique Guillem","raw_affiliation_strings":["AIR Institute, IoT Digital Innovation Hub , Salamanca , Spain","BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":"https://orcid.org/0009-0001-5328-7661","affiliations":[{"raw_affiliation_string":"AIR Institute, IoT Digital Innovation Hub , Salamanca , Spain","institution_ids":[]},{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089930286","display_name":"Marco Zurdo-Tabernero","orcid":"https://orcid.org/0000-0002-6381-5149"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marco Zurdo-Tabernero","raw_affiliation_strings":["16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":"https://orcid.org/0000-0002-6381-5149","affiliations":[{"raw_affiliation_string":"16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I4210134045","https://openalex.org/I184999862"]},{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117297176","display_name":"Noelia Egido Iglesias","orcid":null},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Noelia Egido Iglesias","raw_affiliation_strings":["BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084038656","display_name":"\u00c1ngel Canal-Alonso","orcid":"https://orcid.org/0000-0002-4254-5944"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"\u00c1ngel Canal-Alonso","raw_affiliation_strings":["16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","James Watt School of Engineering , University of Glasgow , Glasgow , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I4210134045","https://openalex.org/I184999862"]},{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]},{"raw_affiliation_string":"James Watt School of Engineering , University of Glasgow , Glasgow , UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072299743","display_name":"Liliana Dur\u00f3n Figueroa","orcid":"https://orcid.org/0009-0002-8039-3731"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Liliana Dur\u00f3n Figueroa","raw_affiliation_strings":["BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":"https://orcid.org/0009-0002-8039-3731","affiliations":[{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082305379","display_name":"Guillermo Hern\u00e1ndez","orcid":"https://orcid.org/0000-0002-7481-5961"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo Hern\u00e1ndez","raw_affiliation_strings":["16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":"https://orcid.org/0000-0002-7481-5961","affiliations":[{"raw_affiliation_string":"16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I4210134045","https://openalex.org/I184999862"]},{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029724469","display_name":"Ang\u00e9lica Gonz\u00e1lez Arrieta","orcid":"https://orcid.org/0000-0002-4726-7103"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]},{"id":"https://openalex.org/I4210134045","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de Salamanca","ror":"https://ror.org/03em6xj44","country_code":"ES","type":"facility","lineage":["https://openalex.org/I184999862","https://openalex.org/I184999862","https://openalex.org/I4210099034","https://openalex.org/I4210134045"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ang\u00e9lica Gonz\u00e1lez-Arrieta","raw_affiliation_strings":["16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":"https://orcid.org/0000-0002-4726-7103","affiliations":[{"raw_affiliation_string":"16779 Institute of Biomedical Research of Salamanca (IBSAL), University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I4210134045","https://openalex.org/I184999862"]},{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004655124","display_name":"Fernando De la Prieta","orcid":"https://orcid.org/0000-0002-8239-5020"},"institutions":[{"id":"https://openalex.org/I184999862","display_name":"Universidad de Salamanca","ror":"https://ror.org/02f40zc51","country_code":"ES","type":"education","lineage":["https://openalex.org/I184999862"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando de la Prieta","raw_affiliation_strings":["BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain"],"raw_orcid":"https://orcid.org/0000-0002-8239-5020","affiliations":[{"raw_affiliation_string":"BISITE Research Group , 16779 University of Salamanca , Salamanca , Spain","institution_ids":["https://openalex.org/I184999862"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5117297497"],"corresponding_institution_ids":["https://openalex.org/I184999862"],"apc_list":null,"apc_paid":null,"fwci":1.5128,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.82828747,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"22","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7442294359207153},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5586408972740173},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5523550510406494},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5383245944976807},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.516569972038269},{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.5074276328086853},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5064657926559448},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.49942517280578613},{"id":"https://openalex.org/keywords/categorical-variable","display_name":"Categorical variable","score":0.48422718048095703},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47193261981010437},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.2259567677974701},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1575634777545929},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1125461757183075},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09240218997001648},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08723717927932739}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7442294359207153},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5586408972740173},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5523550510406494},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5383245944976807},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.516569972038269},{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.5074276328086853},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5064657926559448},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.49942517280578613},{"id":"https://openalex.org/C5274069","wikidata":"https://www.wikidata.org/wiki/Q2285707","display_name":"Categorical variable","level":2,"score":0.48422718048095703},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47193261981010437},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.2259567677974701},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1575634777545929},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1125461757183075},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09240218997001648},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08723717927932739},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2024-0047","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0047","pdf_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0047/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40538169","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40538169","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2032886ce37a4467932d0ae00050133e","is_oa":true,"landing_page_url":"https://doaj.org/article/2032886ce37a4467932d0ae00050133e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 22, Iss 2, Pp 788-9 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11375574","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12569578","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2024-0047","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0047","pdf_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0047/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1643949827","display_name":null,"funder_award_id":"AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1670632577","display_name":null,"funder_award_id":"CNS2022-135101","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2601397997","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G300979063","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3219925899","display_name":null,"funder_award_id":"MCIN/AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3681454997","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4042783231","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6823456974","display_name":null,"funder_award_id":"AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7535663061","display_name":null,"funder_award_id":"AEI/10.","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8695128545","display_name":null,"funder_award_id":"MCIN/AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411466735.pdf","grobid_xml":"https://content.openalex.org/works/W4411466735.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1964426200","https://openalex.org/W2002464052","https://openalex.org/W2011582941","https://openalex.org/W2034691490","https://openalex.org/W2051978340","https://openalex.org/W2077318478","https://openalex.org/W2087588809","https://openalex.org/W2100867326","https://openalex.org/W2102659607","https://openalex.org/W2103017472","https://openalex.org/W2110400205","https://openalex.org/W2111326065","https://openalex.org/W2114029728","https://openalex.org/W2117856964","https://openalex.org/W2122732537","https://openalex.org/W2129952088","https://openalex.org/W2132023322","https://openalex.org/W2148105023","https://openalex.org/W2167949449","https://openalex.org/W2174602966","https://openalex.org/W2183341477","https://openalex.org/W2195303995","https://openalex.org/W2417483443","https://openalex.org/W2511281583","https://openalex.org/W2521967673","https://openalex.org/W2535426958","https://openalex.org/W2537679995","https://openalex.org/W2583911935","https://openalex.org/W2595351638","https://openalex.org/W2605897695","https://openalex.org/W2754300472","https://openalex.org/W2801006204","https://openalex.org/W2804425727","https://openalex.org/W2883972171","https://openalex.org/W2891643925","https://openalex.org/W2896396057","https://openalex.org/W2898789672","https://openalex.org/W2905452503","https://openalex.org/W2909194804","https://openalex.org/W2919115771","https://openalex.org/W2947628999","https://openalex.org/W2949492942","https://openalex.org/W2950829512","https://openalex.org/W2979975889","https://openalex.org/W2981079084","https://openalex.org/W3002842489","https://openalex.org/W3013150773","https://openalex.org/W3023683757","https://openalex.org/W3029661147","https://openalex.org/W3081409951","https://openalex.org/W3095866415","https://openalex.org/W3101603399","https://openalex.org/W3108417339","https://openalex.org/W3123287010","https://openalex.org/W3173196825","https://openalex.org/W3196716609","https://openalex.org/W3212342036","https://openalex.org/W4308616307","https://openalex.org/W4311847607","https://openalex.org/W4366605966","https://openalex.org/W4389367121","https://openalex.org/W4390655913","https://openalex.org/W4409774225","https://openalex.org/W6647676880"],"related_works":["https://openalex.org/W4386799044","https://openalex.org/W2773208253","https://openalex.org/W2560646951","https://openalex.org/W4297454206","https://openalex.org/W65104662","https://openalex.org/W1871748041","https://openalex.org/W4293192871","https://openalex.org/W3136973226","https://openalex.org/W4220968781","https://openalex.org/W2977327189"],"abstract_inverted_index":{"The":[0,46,106,124],"rapid":[1],"advancement":[2],"of":[3,12,17,36,57,63,89,142],"Next-Generation":[4],"Sequencing":[5],"(NGS)":[6],"technologies":[7],"has":[8],"revolutionized":[9],"the":[10,34,55,75,87,90,93,127,140],"field":[11],"genomics,":[13],"producing":[14],"large":[15],"volumes":[16],"data":[18,114,122],"that":[19],"necessitate":[20],"sophisticated":[21],"analytical":[22],"techniques.":[23],"This":[24],"paper":[25],"introduces":[26],"a":[27,39,51,61,71],"Deep":[28],"Learning":[29],"model":[30,47,76],"designed":[31],"to":[32,119],"predict":[33],"pathogenicity":[35],"genetic":[37,67],"variants,":[38,136],"vital":[40],"component":[41],"in":[42,132],"advancing":[43],"personalized":[44],"medicine.":[45],"is":[48,92],"trained":[49],"on":[50,145],"dataset":[52],"derived":[53],"from":[54],"analysis":[56],"NGS":[58],"outputs,":[59],"containing":[60],"combination":[62],"well-defined":[64],"and":[65,82,102,117],"ambiguous":[66],"variants.":[68],"By":[69],"employing":[70],"semi-supervised":[72],"learning":[73],"approach,":[74],"efficiently":[77],"utilizes":[78],"both":[79,100],"confidently":[80,134],"labeled":[81,135],"less":[83,146],"certain":[84,147],"data.":[85,149],"At":[86],"core":[88],"methodology":[91],"Feature":[94],"Tokenizer":[95],"Transformer":[96],"architecture,":[97],"which":[98],"processes":[99],"numerical":[101],"categorical":[103],"genomic":[104],"information.":[105],"preprocessing":[107],"pipeline":[108],"includes":[109],"key":[110],"steps":[111],"such":[112],"as":[113],"imputation,":[115],"scaling,":[116],"encoding":[118],"ensure":[120],"high":[121],"quality.":[123],"results":[125],"highlight":[126],"model's":[128],"impressive":[129],"accuracy,":[130],"particularly":[131],"detecting":[133],"while":[137],"also":[138],"addressing":[139],"impact":[141],"its":[143],"predictions":[144],"(soft-labeled)":[148]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
