{"id":"https://openalex.org/W4408935344","doi":"https://doi.org/10.1515/jib-2024-0046","title":"Fcodes update: a kinship encoding framework with F-Tree GUI &amp; LLM inference","display_name":"Fcodes update: a kinship encoding framework with F-Tree GUI &amp; LLM inference","publication_year":2025,"publication_date":"2025-03-28","ids":{"openalex":"https://openalex.org/W4408935344","doi":"https://doi.org/10.1515/jib-2024-0046","pmid":"https://pubmed.ncbi.nlm.nih.gov/40155191"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2024-0046","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0046","pdf_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0046/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0046/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070394894","display_name":"Daniel P\u00e9rez-Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-8110-3567"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Daniel P\u00e9rez-Rodr\u00edguez","raw_affiliation_strings":["Dept. of Telematics Engineering, ESEI-Escuela Superior de Ingenier\u00eda Inform\u00e1tica, Universidade de Vigo , 32004 Ourense , Spain","Science and Business S.L. , Edificio CITEXVI , R\u00faa Fonte das Abelleiras s/n., Local 41.2, Vigo University Campus, 36310 , Vigo , Spain"],"raw_orcid":"https://orcid.org/0000-0002-8110-3567","affiliations":[{"raw_affiliation_string":"Dept. of Telematics Engineering, ESEI-Escuela Superior de Ingenier\u00eda Inform\u00e1tica, Universidade de Vigo , 32004 Ourense , Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Science and Business S.L. , Edificio CITEXVI , R\u00faa Fonte das Abelleiras s/n., Local 41.2, Vigo University Campus, 36310 , Vigo , Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050160250","display_name":"Roberto Carlos Ag\u00eds\u2010Balboa","orcid":"https://orcid.org/0000-0001-9899-9569"},"institutions":[{"id":"https://openalex.org/I4210096311","display_name":"Complejo Hospitalario Universitario de Santiago","ror":"https://ror.org/00mpdg388","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210096311"]},{"id":"https://openalex.org/I4210148771","display_name":"Instituto de Investigaci\u00f3n Sanitaria de Santiago","ror":"https://ror.org/05n7xcf53","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210148771"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roberto C. Ag\u00eds-Balboa","raw_affiliation_strings":["Neuro Epigenetics Lab, Health Research Institute of Santiago de Compostela (IDIS) , Santiago University Hospital Complex , 15706 Santiago de Compostela , Spain","Servicio de Neurolog\u00eda , Hospital Cl\u00ednico Universitario de Santiago , 15706 Santiago de Compostela , Spain","Translational Research in Neurological Diseases Group, Health Research Institute of Santiago de Compostela (IDIS) , Santiago University Hospital Complex , 15706 Santiago de Compostela , Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neuro Epigenetics Lab, Health Research Institute of Santiago de Compostela (IDIS) , Santiago University Hospital Complex , 15706 Santiago de Compostela , Spain","institution_ids":["https://openalex.org/I4210148771"]},{"raw_affiliation_string":"Servicio de Neurolog\u00eda , Hospital Cl\u00ednico Universitario de Santiago , 15706 Santiago de Compostela , Spain","institution_ids":["https://openalex.org/I4210096311"]},{"raw_affiliation_string":"Translational Research in Neurological Diseases Group, Health Research Institute of Santiago de Compostela (IDIS) , Santiago University Hospital Complex , 15706 Santiago de Compostela , Spain","institution_ids":["https://openalex.org/I4210148771"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038155908","display_name":"Hugo L\u00f3pez-Fern\u00e1ndez","orcid":"https://orcid.org/0000-0002-6476-7206"},"institutions":[{"id":"https://openalex.org/I4210091478","display_name":"Galicia Sur Biomedical Foundation","ror":"https://ror.org/00jdfsf63","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210091478"]},{"id":"https://openalex.org/I4210158352","display_name":"Servicio Gallego de Salud","ror":"https://ror.org/0591s4t67","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210158352"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Hugo L\u00f3pez-Fern\u00e1ndez","raw_affiliation_strings":["SING Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS UVIGO , 36213 Vigo , Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SING Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS UVIGO , 36213 Vigo , Spain","institution_ids":["https://openalex.org/I4210091478","https://openalex.org/I4210158352"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070394894"],"corresponding_institution_ids":["https://openalex.org/I6289922"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02459255,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinship","display_name":"Kinship","score":0.7621780037879944},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6058481931686401},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.5850344896316528},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5600040555000305},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5206626653671265},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4032632112503052},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.33230912685394287},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24826356768608093},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.21320930123329163},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17617344856262207},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.10858660936355591}],"concepts":[{"id":"https://openalex.org/C144348335","wikidata":"https://www.wikidata.org/wiki/Q171318","display_name":"Kinship","level":2,"score":0.7621780037879944},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6058481931686401},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.5850344896316528},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5600040555000305},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5206626653671265},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4032632112503052},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.33230912685394287},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24826356768608093},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.21320930123329163},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17617344856262207},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.10858660936355591},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003241","descriptor_name":"Consanguinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005195","descriptor_name":"Family Relations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2024-0046","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0046","pdf_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0046/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40155191","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40155191","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:ad6f71d230a5492db182b2cb2de46280","is_oa":true,"landing_page_url":"https://doaj.org/article/ad6f71d230a5492db182b2cb2de46280","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 22, Iss 2, Pp 559-75 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11375573","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12569577","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2024-0046","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0046","pdf_url":"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0046/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G289314026","display_name":null,"funder_award_id":"ED431C 2022/03-GRC","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"}],"funders":[{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408935344.pdf","grobid_xml":"https://content.openalex.org/works/W4408935344.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W2161633633","https://openalex.org/W4306173528"],"related_works":["https://openalex.org/W1579373186","https://openalex.org/W4312685612","https://openalex.org/W2046291598","https://openalex.org/W4317827232","https://openalex.org/W2890085216","https://openalex.org/W2504703202","https://openalex.org/W4252628068","https://openalex.org/W1708418756","https://openalex.org/W2976679446","https://openalex.org/W2414520379"],"abstract_inverted_index":{"Family":[0],"structures":[1],"play":[2],"a":[3,89,131,145,183],"crucial":[4],"role":[5],"in":[6,36,43,66,182],"personal":[7],"development,":[8],"social":[9,190],"dynamics,":[10],"and":[11,23,51,61,91,104,120,155,194],"mental":[12,195],"health.":[13],"Traditional":[14],"systems":[15,48],"for":[16,55,94,101,147],"encoding":[17,95,140],"genealogical":[18],"data,":[19],"such":[20,74],"as":[21,75,124,126],"Ahnentafel":[22],"the":[24,116,127,139,149,157,178],"Register":[25],"System,":[26],"offer":[27],"methods":[28],"to":[29,64,82,115,137,167,192],"document":[30],"lineage":[31],"but":[32],"face":[33],"limitations,":[34],"particularly":[35],"accommodating":[37],"horizontal":[38],"relationships":[39,97,171],"or":[40,77],"handling":[41],"changes":[42],"family":[44,170],"datasets.":[45],"Modern":[46],"computational":[47,105],"like":[49],"LINKAGE":[50],"PED,":[52],"while":[53],"powerful":[54],"genetic":[56],"analysis,":[57],"lack":[58],"human":[59],"readability":[60],"are":[62],"challenging":[63],"apply":[65],"fields":[67],"where":[68],"unstructured,":[69],"narrative":[70,173],"data":[71],"is":[72,99],"common,":[73],"sociology":[76],"psychiatry.":[78],"This":[79],"paper":[80],"aims":[81],"bridge":[83],"this":[84],"gap":[85],"by":[86],"enhancing":[87],"Fcodes,":[88],"flexible":[90],"intuitive":[92],"algorithm":[93,119],"kinship":[96],"that":[98],"suited":[100],"both":[102],"manual":[103],"use.":[106],"Building":[107],"on":[108],"our":[109],"previous":[110],"work,":[111],"we":[112,143],"present":[113],"improvements":[114],"Fcodes":[117,154,181],"core":[118],"command-line":[121],"interface":[122,135],"(CLI),":[123],"well":[125],"development":[128],"of":[129,151,159,180,186],"F-Tree,":[130],"new":[132],"graphical":[133],"user":[134],"(GUI)":[136],"streamline":[138],"process.":[141],"Additionally,":[142],"introduce":[144],"method":[146],"estimating":[148],"coefficient":[150],"inbreeding":[152],"using":[153],"explore":[156],"application":[158],"artificial":[160],"intelligence,":[161],"namely":[162],"large":[163],"language":[164],"models":[165],"(LLMs),":[166],"automatically":[168],"infer":[169],"from":[172,189],"text.":[174],"These":[175],"advancements":[176],"highlight":[177],"potential":[179],"wide":[184],"range":[185],"research":[187],"contexts,":[188],"studies":[191],"genetics":[193],"health":[196],"research.":[197]},"counts_by_year":[],"updated_date":"2026-05-19T08:33:51.333923","created_date":"2025-03-29T00:00:00"}
