{"id":"https://openalex.org/W4406335890","doi":"https://doi.org/10.1515/jib-2024-0025","title":"Immunoinformatics-guided design of a multiepitope peptide vaccine targeting the receptor-binding domain of SARS-CoV-2 spike glycoprotein: insights from Indonesian samples","display_name":"Immunoinformatics-guided design of a multiepitope peptide vaccine targeting the receptor-binding domain of SARS-CoV-2 spike glycoprotein: insights from Indonesian samples","publication_year":2025,"publication_date":"2025-01-13","ids":{"openalex":"https://openalex.org/W4406335890","doi":"https://doi.org/10.1515/jib-2024-0025","pmid":"https://pubmed.ncbi.nlm.nih.gov/39801269"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2024-0025","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0025","pdf_url":null,"source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1515/jib-2024-0025","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071671693","display_name":"Irvan Faizal","orcid":"https://orcid.org/0000-0002-7555-0678"},"institutions":[{"id":"https://openalex.org/I161010349","display_name":"Atma Jaya Catholic University of Indonesia","ror":"https://ror.org/02hd2zk59","country_code":"ID","type":"education","lineage":["https://openalex.org/I161010349"]}],"countries":["ID"],"is_corresponding":true,"raw_author_name":"Irvan Faizal","raw_affiliation_strings":["Department of Biotechnology, Faculty of Biotechnology , Atma Jaya Catholic University of Indonesia , BSD Campus , Tangerang 15345 , Indonesia","Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia"],"raw_orcid":"https://orcid.org/0000-0002-7555-0678","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Faculty of Biotechnology , Atma Jaya Catholic University of Indonesia , BSD Campus , Tangerang 15345 , Indonesia","institution_ids":["https://openalex.org/I161010349"]},{"raw_affiliation_string":"Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Darrian Chandra","orcid":null},"institutions":[{"id":"https://openalex.org/I161010349","display_name":"Atma Jaya Catholic University of Indonesia","ror":"https://ror.org/02hd2zk59","country_code":"ID","type":"education","lineage":["https://openalex.org/I161010349"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Darrian Chandra","raw_affiliation_strings":["Department of Biotechnology, Faculty of Biotechnology , Atma Jaya Catholic University of Indonesia , BSD Campus , Tangerang 15345 , Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Faculty of Biotechnology , Atma Jaya Catholic University of Indonesia , BSD Campus , Tangerang 15345 , Indonesia","institution_ids":["https://openalex.org/I161010349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090154813","display_name":"Tarwadi","orcid":"https://orcid.org/0000-0002-9915-6739"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tarwadi","raw_affiliation_strings":["Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia"],"raw_orcid":"https://orcid.org/0000-0002-9915-6739","affiliations":[{"raw_affiliation_string":"Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032938723","display_name":"Sabar Pambudi","orcid":"https://orcid.org/0000-0003-0703-437X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sabar Pambudi","raw_affiliation_strings":["Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia"],"raw_orcid":"https://orcid.org/0000-0003-0703-437X","affiliations":[{"raw_affiliation_string":"Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006834243","display_name":"Astutiati Nurhasanah","orcid":"https://orcid.org/0000-0003-0912-6913"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Astutiati Nurhasanah","raw_affiliation_strings":["Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia"],"raw_orcid":"https://orcid.org/0000-0003-0912-6913","affiliations":[{"raw_affiliation_string":"Research Centre for Vaccine and Drugs, National Research and Innovation Agency-Republic of Indonesia , Kawasan Puspiptek Serpong , Tangerang Selatan 15314 , Indonesia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066022959","display_name":"Rizky Priambodo","orcid":"https://orcid.org/0000-0002-6576-8796"},"institutions":[{"id":"https://openalex.org/I3133421993","display_name":"State University of Jakarta","ror":"https://ror.org/01hgg7b81","country_code":"ID","type":"education","lineage":["https://openalex.org/I3133421993"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Rizky Priambodo","raw_affiliation_strings":["Department of Biology , Universitas Negeri Jakarta , Jl. Rawamangun Muka , Rawamangun Jakarta Timur 13220 , Indonesia"],"raw_orcid":"https://orcid.org/0000-0002-6576-8796","affiliations":[{"raw_affiliation_string":"Department of Biology , Universitas Negeri Jakarta , Jl. Rawamangun Muka , Rawamangun Jakarta Timur 13220 , Indonesia","institution_ids":["https://openalex.org/I3133421993"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038485246","display_name":"Muhammad Yusuf","orcid":"https://orcid.org/0000-0003-1627-1553"},"institutions":[{"id":"https://openalex.org/I91819753","display_name":"Padjadjaran University","ror":"https://ror.org/00xqf8t64","country_code":"ID","type":"education","lineage":["https://openalex.org/I91819753"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Muhammad Yusuf","raw_affiliation_strings":["Department of Chemistry, Faculty of Mathematics and Natural Sciences , Universitas Padjadjaran , Jatinangor 45363 , Indonesia","Research Center for Molecular Biotechnology and Bioinformatics , Universitas Padjadjaran , Bandung 40133 , Indonesia"],"raw_orcid":"https://orcid.org/0000-0003-1627-1553","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Faculty of Mathematics and Natural Sciences , Universitas Padjadjaran , Jatinangor 45363 , Indonesia","institution_ids":["https://openalex.org/I91819753"]},{"raw_affiliation_string":"Research Center for Molecular Biotechnology and Bioinformatics , Universitas Padjadjaran , Bandung 40133 , Indonesia","institution_ids":["https://openalex.org/I91819753"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5071671693"],"corresponding_institution_ids":["https://openalex.org/I161010349"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00497254,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8629733324050903},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.6909579634666443},{"id":"https://openalex.org/keywords/antigenicity","display_name":"Antigenicity","score":0.6683390736579895},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5968412160873413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5649893879890442},{"id":"https://openalex.org/keywords/peptide-vaccine","display_name":"Peptide vaccine","score":0.5442152619361877},{"id":"https://openalex.org/keywords/linear-epitope","display_name":"Linear epitope","score":0.4965212941169739},{"id":"https://openalex.org/keywords/epitope-mapping","display_name":"Epitope mapping","score":0.47928136587142944},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.45057469606399536},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.3097934126853943},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.2629682421684265},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17725539207458496},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.08900269865989685},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06932279467582703}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8629733324050903},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.6909579634666443},{"id":"https://openalex.org/C2779026604","wikidata":"https://www.wikidata.org/wiki/Q4774742","display_name":"Antigenicity","level":3,"score":0.6683390736579895},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5968412160873413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5649893879890442},{"id":"https://openalex.org/C2776789287","wikidata":"https://www.wikidata.org/wiki/Q7166532","display_name":"Peptide vaccine","level":4,"score":0.5442152619361877},{"id":"https://openalex.org/C78598654","wikidata":"https://www.wikidata.org/wiki/Q17140316","display_name":"Linear epitope","level":4,"score":0.4965212941169739},{"id":"https://openalex.org/C2781241564","wikidata":"https://www.wikidata.org/wiki/Q1347450","display_name":"Epitope mapping","level":4,"score":0.47928136587142944},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.45057469606399536},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.3097934126853943},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.2629682421684265},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17725539207458496},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.08900269865989685},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06932279467582703},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000095763","descriptor_name":"Immunoinformatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095763","descriptor_name":"Immunoinformatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000096202","descriptor_name":"Protein Subunit Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000096202","descriptor_name":"Protein Subunit Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007214","descriptor_name":"Indonesia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007214","descriptor_name":"Indonesia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2024-0025","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0025","pdf_url":null,"source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39801269","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39801269","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13066345","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13066345/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13066345/pdf/jib-22-3-jib-2024-0025.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5b11108c7e0345cc91ab78b73eee5459","is_oa":true,"landing_page_url":"https://doaj.org/article/5b11108c7e0345cc91ab78b73eee5459","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 22, Iss 3, Pp 549-56 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jib-2024-0025","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0025","pdf_url":null,"source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.75,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2810164416","display_name":null,"funder_award_id":"RIIM 1 LPDP","funder_id":"https://openalex.org/F4320319804","funder_display_name":"Badan Riset dan Inovasi Nasional"}],"funders":[{"id":"https://openalex.org/F4320319804","display_name":"Badan Riset dan Inovasi Nasional","ror":null},{"id":"https://openalex.org/F4320330442","display_name":"Universitas Katolik Indonesia Atma Jaya","ror":"https://ror.org/02hd2zk59"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1768303176","https://openalex.org/W1963706689","https://openalex.org/W2087923229","https://openalex.org/W2611314002","https://openalex.org/W2777980778","https://openalex.org/W2787221426","https://openalex.org/W3011537081","https://openalex.org/W3014553071","https://openalex.org/W3015294015","https://openalex.org/W3039821298","https://openalex.org/W3046463683","https://openalex.org/W3136437538","https://openalex.org/W3159357077","https://openalex.org/W3213529457","https://openalex.org/W4200497128","https://openalex.org/W4220726660","https://openalex.org/W4220874099","https://openalex.org/W4220892046","https://openalex.org/W4225515624","https://openalex.org/W4280543101","https://openalex.org/W4283702561","https://openalex.org/W4287959042","https://openalex.org/W4308490832"],"related_works":["https://openalex.org/W2365209051","https://openalex.org/W2072925709","https://openalex.org/W4392361461","https://openalex.org/W4236556026","https://openalex.org/W3096915742","https://openalex.org/W2362079001","https://openalex.org/W1540778049","https://openalex.org/W3189724180","https://openalex.org/W4283585174","https://openalex.org/W2015286028"],"abstract_inverted_index":{"The":[0,81,125,167],"emergence":[1],"of":[2,5,21,34,97,118,132,144,156,189],"new":[3],"variants":[4],"SARS-CoV-2,":[6],"including":[7],"Alpha,":[8],"Beta,":[9],"Gamma,":[10],"Delta,":[11],"Omicron":[12],"variants,":[13],"and":[14,51,68,84,123,150,152,163,180,191,214],"XBB":[15],"sub-variants,":[16],"contributes":[17],"to":[18,86,199,219],"the":[19,63,72,78,87,104,110,129,141,171,217],"number":[20],"coronavirus":[22],"cases":[23],"worldwide.":[24],"SARS-CoV-2":[25,111],"is":[26,107,148],"a":[27,32,98,154,186],"positive":[28],"RNA":[29],"virus":[30],"with":[31,62,133],"genome":[33],"29.9":[35],"kb":[36],"that":[37,128,169,210],"encodes":[38],"four":[39],"structural":[40],"proteins:":[41],"spike":[42],"glycoprotein":[43,46,49,53,106],"(S),":[44],"envelope":[45],"(E),":[47],"membrane":[48,69],"(M),":[50],"nucleocapsid":[52],"(N).":[54],"These":[55],"proteins":[56],"are":[57],"vital":[58],"for":[59,178,182],"viral":[60],"activity,":[61],"S":[64],"protein":[65],"facilitating":[66],"attachment":[67],"fusion":[70],"through":[71],"receptor-binding":[73],"domain":[74],"(RBD)":[75],"located":[76],"in":[77],"S1":[79],"subunit.":[80],"RBD":[82,105,130],"recognizes":[83],"binds":[85],"human":[88],"angiotensin-converting":[89],"enzyme":[90],"2":[91],"(ACE-2)":[92],"protein.":[93],"An":[94],"immunoinformatic-aided":[95],"design":[96,200],"peptide-based":[99],"multiepitope":[100],"vaccine":[101,203],"candidate":[102,204],"targeting":[103],"constructed":[108],"from":[109,115,137,208],"sequence":[112],"data":[113],"base":[114],"various":[116],"regions":[117],"Indonesia":[119,209],"(Jakarta,":[120],"West":[121,138],"Java,":[122],"Bali).":[124],"results":[126],"show":[127,185],"region":[131],"accession":[134],"ID":[135],"EPI_ISL_15982641":[136],"Java":[139],"had":[140],"highest":[142],"antigenicity":[143],"0.5904.":[145],"This":[146],"isolate":[147],"non-toxic":[149],"non-allergenic":[151],"shows":[153],"total":[155],"18":[157],"LBL":[158],"epitopes,":[159,162],"72":[160],"CTL":[161],"98":[164],"HTL":[165],"epitopes.":[166],"epitope":[168,202],"has":[170,211],"best":[172],"overall":[173],"binding":[174,187],"affinity":[175,188],"was":[176],"GCHNKCAY":[177],"MHC-I":[179],"GGCVFSYVGCHNKCAYWV":[181],"MHC-II":[183],"which":[184],"-13.6":[190],"-15.5":[192],"(kcal/mol),":[193],"respectively.":[194],"Therefore,":[195],"this":[196],"study":[197],"aims":[198],"an":[201,221],"based":[205],"on":[206],"samples":[207],"good":[212],"characteristics":[213],"may":[215],"have":[216],"potential":[218],"stimulate":[220],"immune":[222],"response":[223],"against":[224],"SARS-CoV-2.":[225]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
