{"id":"https://openalex.org/W4400804041","doi":"https://doi.org/10.1515/jib-2024-0015","title":"Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024","display_name":"Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024","publication_year":2024,"publication_date":"2024-03-01","ids":{"openalex":"https://openalex.org/W4400804041","doi":"https://doi.org/10.1515/jib-2024-0015","pmid":"https://pubmed.ncbi.nlm.nih.gov/39026464"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2024-0015","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0015","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2024-0015/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2024-0015/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028677591","display_name":"Martin Golebiewski","orcid":"https://orcid.org/0000-0002-8683-7084"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Martin Golebiewski","raw_affiliation_strings":["40092 Heidelberg Institute for Theoretical Studies (HITS) , Heidelberg , Germany"],"affiliations":[{"raw_affiliation_string":"40092 Heidelberg Institute for Theoretical Studies (HITS) , Heidelberg , Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010789029","display_name":"Gary D. Bader","orcid":"https://orcid.org/0000-0003-0185-8861"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gary Bader","raw_affiliation_strings":["University of Toronto , Toronto , Canada"],"affiliations":[{"raw_affiliation_string":"University of Toronto , Toronto , Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009493678","display_name":"Padraig Gleeson","orcid":"https://orcid.org/0000-0001-5963-8576"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Padraig Gleeson","raw_affiliation_strings":["Dept. of Neuroscience, Physiology and Pharmacology , University College London , London , UK"],"affiliations":[{"raw_affiliation_string":"Dept. of Neuroscience, Physiology and Pharmacology , University College London , London , UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000195963","display_name":"Thomas E. Gorochowski","orcid":"https://orcid.org/0000-0003-1702-786X"},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas E. Gorochowski","raw_affiliation_strings":["School of Biological Sciences , University of Bristol , Bristol , UK"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences , University of Bristol , Bristol , UK","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049649026","display_name":"Sarah Keating","orcid":"https://orcid.org/0000-0002-3356-3542"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah M. Keating","raw_affiliation_strings":["Advanced Research Computing Centre , University College London , London , UK"],"affiliations":[{"raw_affiliation_string":"Advanced Research Computing Centre , University College London , London , UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012727458","display_name":"Matthias K\u00f6nig","orcid":"https://orcid.org/0000-0003-1725-179X"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias K\u00f6nig","raw_affiliation_strings":["9373 Institute for Biology, Institute for Theoretical Biology, Humboldt-University Berlin , Berlin , Germany"],"affiliations":[{"raw_affiliation_string":"9373 Institute for Biology, Institute for Theoretical Biology, Humboldt-University Berlin , Berlin , Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris J. Myers","raw_affiliation_strings":["Dept. of Electrical, Computer, and Energy Eng. , University of Colorado Boulder , Boulder , USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Electrical, Computer, and Energy Eng. , University of Colorado Boulder , Boulder , USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086460310","display_name":"David Nickerson","orcid":"https://orcid.org/0000-0003-4667-9779"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"David P. Nickerson","raw_affiliation_strings":["428614 Auckland Bioengineering Institute, University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"428614 Auckland Bioengineering Institute, University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059487495","display_name":"Bj\u00f6rn Sommer","orcid":"https://orcid.org/0000-0003-1514-9898"},"institutions":[{"id":"https://openalex.org/I165526535","display_name":"Royal College of Art","ror":"https://ror.org/01egahc47","country_code":"GB","type":"education","lineage":["https://openalex.org/I165526535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn Sommer","raw_affiliation_strings":["4910 Royal College of Art , London , UK"],"affiliations":[{"raw_affiliation_string":"4910 Royal College of Art , London , UK","institution_ids":["https://openalex.org/I165526535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103188993","display_name":"Dagmar Waltemath","orcid":"https://orcid.org/0000-0002-5886-5563"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dagmar Waltemath","raw_affiliation_strings":["Medical Informatics Laboratory , University Medicine Greifswald , Greifswald , Germany"],"affiliations":[{"raw_affiliation_string":"Medical Informatics Laboratory , University Medicine Greifswald , Greifswald , Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003441276","display_name":"Falk Schreiber","orcid":"https://orcid.org/0000-0002-9307-3254"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","DE"],"is_corresponding":true,"raw_author_name":"Falk Schreiber","raw_affiliation_strings":["Dept. of Computer and Information Science , 26567 University of Konstanz , Konstanz , Germany","Faculty of Information Technology , Monash University , Clayton , Australia"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer and Information Science , 26567 University of Konstanz , Konstanz , Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"Faculty of Information Technology , Monash University , Clayton , Australia","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5003441276","https://openalex.org/A5028677591"],"corresponding_institution_ids":["https://openalex.org/I189712700","https://openalex.org/I56590836","https://openalex.org/I71030271"],"apc_list":null,"apc_paid":null,"fwci":1.8714,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.8550969,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"21","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9631999731063843,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9429000020027161,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.5606870651245117},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4253690838813782},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.3463734984397888},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.3437127470970154},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33056890964508057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28212296962738037}],"concepts":[{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.5606870651245117},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4253690838813782},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.3463734984397888},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3437127470970154},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33056890964508057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28212296962738037}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1515/jib-2024-0015","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0015","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2024-0015/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39026464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39026464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:research-information.bris.ac.uk:openaire/5df0bca8-eb7a-419b-b51a-07751011686c","is_oa":true,"landing_page_url":"https://research-information.bris.ac.uk/en/publications/5df0bca8-eb7a-419b-b51a-07751011686c","pdf_url":null,"source":{"id":"https://openalex.org/S7407055359","display_name":"Explore Bristol Research","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Golebiewski, M, Bader, G, Gleeson, P, Gorochowski, T E, Keating, S M, K\u00f6nig, M, Myers, C J, Nickerson, D P, Sommer, B, Waltemath, D & Schreiber, F 2024, 'Specifications of standards in systems and synthetic biology : status, developments, and tools in 2024', Journal of Integrative Bioinformatics, vol. 21, no. 1, 20240015. https://doi.org/10.1515/jib-2024-0015","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11293897","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11293897","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11293897/pdf/jib-21-1-jib-2024-0015.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:cuscholar:tx31qk742","is_oa":false,"landing_page_url":"https://scholar.colorado.edu/concern/articles/tx31qk742","pdf_url":null,"source":{"id":"https://openalex.org/S4306401957","display_name":"CU Scholar (University of Colorado Boulder)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188538660","host_organization_name":"University of Colorado Boulder","host_organization_lineage":["https://openalex.org/I188538660"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:09758323b0ca4712997ca89002e677c9","is_oa":true,"landing_page_url":"https://doaj.org/article/09758323b0ca4712997ca89002e677c9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 21, Iss 1, Pp 1-6 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jib-2024-0015","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2024-0015","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2024-0015/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400804041.pdf","grobid_xml":"https://content.openalex.org/works/W4400804041.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W1534797499","https://openalex.org/W1969709265","https://openalex.org/W1973242626","https://openalex.org/W1984374486","https://openalex.org/W1986365650","https://openalex.org/W1991339919","https://openalex.org/W1999758530","https://openalex.org/W2060184615","https://openalex.org/W2069157810","https://openalex.org/W2096951208","https://openalex.org/W2098367419","https://openalex.org/W2102653059","https://openalex.org/W2123783513","https://openalex.org/W2127950479","https://openalex.org/W2128763542","https://openalex.org/W2137575744","https://openalex.org/W2138326194","https://openalex.org/W2145435867","https://openalex.org/W2150908245","https://openalex.org/W2154268795","https://openalex.org/W2163993275","https://openalex.org/W2164750538","https://openalex.org/W2170122529","https://openalex.org/W2181889137","https://openalex.org/W2185357718","https://openalex.org/W2185459477","https://openalex.org/W2186090899","https://openalex.org/W2188979829","https://openalex.org/W2291100967","https://openalex.org/W2416349955","https://openalex.org/W2441893520","https://openalex.org/W2465447782","https://openalex.org/W2535730799","https://openalex.org/W2565441153","https://openalex.org/W2565927981","https://openalex.org/W2783587640","https://openalex.org/W2788254992","https://openalex.org/W2791048175","https://openalex.org/W2795410052","https://openalex.org/W2916377258","https://openalex.org/W2916475656","https://openalex.org/W2950329335","https://openalex.org/W2950651308","https://openalex.org/W2951522607","https://openalex.org/W2961644112","https://openalex.org/W3036988853","https://openalex.org/W3039591869","https://openalex.org/W3039819461","https://openalex.org/W3041939341","https://openalex.org/W3048335229","https://openalex.org/W3048575781","https://openalex.org/W3080133182","https://openalex.org/W3167276600","https://openalex.org/W3175355733","https://openalex.org/W3186538906","https://openalex.org/W3189395149","https://openalex.org/W3206775462","https://openalex.org/W3206868055","https://openalex.org/W4205223779","https://openalex.org/W4234812893","https://openalex.org/W4239049776","https://openalex.org/W4240637682","https://openalex.org/W4241685680","https://openalex.org/W4242902282","https://openalex.org/W4250970967","https://openalex.org/W4253983984","https://openalex.org/W4254464710","https://openalex.org/W4256366179","https://openalex.org/W4280538557","https://openalex.org/W4323670171","https://openalex.org/W4324088634","https://openalex.org/W4327737124","https://openalex.org/W4361291987","https://openalex.org/W4386909827","https://openalex.org/W4390140137","https://openalex.org/W4391540638","https://openalex.org/W4394789019","https://openalex.org/W4399041853"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W3141738981","https://openalex.org/W2099102792","https://openalex.org/W4254255930","https://openalex.org/W4377564965","https://openalex.org/W4205129443","https://openalex.org/W2009687716","https://openalex.org/W2390279801","https://openalex.org/W634364059"],"abstract_inverted_index":{"The":[0,87],"&ldquo;COmputational":[1],"Modeling":[2],"in":[3,20,49,59,98,109,145,187,209,217,229,259,267,274],"BIology":[4],"NEtwork&rdquo;":[5],"(COMBINE)":[6],"initiative":[7],"aims":[8],"to":[9,123],"harmonise":[10],"the":[11,51,92,125,140,160,220],"development":[12,42,122],"of":[13,43,91,132,143,159,207,257],"diverse":[14],"community":[15],"standards":[16,46,97,137,162,172,208,258],"for":[17,47,96],"computational":[18],"models":[19],"biology":[21,102],"[<a":[22,188],"class=\"link":[23,70,151,189,239],"link-bibr\"":[24,71,190,240],"title=\"1.":[25],"Hucka,":[26,83,200,250],"M,":[27,76,84,193,197,201,247,251],"Nickerson,":[28],"DP,":[29],"Bader,":[30],"GD,":[31],"Bergmann,":[32],"FT,":[33],"Cooper,":[34],"J,":[35],"Demir,":[36],"E,":[37],"et":[38,85,204,254],"al..":[39,86,205,255],"Promoting":[40],"coordinated":[41],"community-based":[44],"information":[45],"modeling":[48,144],"biology:":[50,213,263],"COMBINE":[52,161,171,221],"initiative.":[53],"Front":[54],"Bioeng":[55],"Biotechnol":[56],"2015;3:1&ndash;6.":[57],"https://doi.org/10.3389/fbioe.2015.00019.Search":[58],"Google":[60,110,230,275],"Scholar":[61,111,231,276],"PubMed":[62,63,112,113,232,233,277,278],"Central":[64,114,234,279],"\"":[65,115,235,280],"href=\"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0015/html#j_jib-2024-0015_ref_001\"":[66],"data-bs-target=\"j_jib-2024-0015_ref_001\"":[67],"data-bs-toggle=\"tooltip\">1</a>,":[68],"<a":[69,150],"title=\"2.":[72],"Waltemath,":[73],"D,":[74],"Golebiewski,":[75,196,246],"Blinov,":[77],"ML,":[78],"Gleeson,":[79,194,244],"P,":[80,195,245],"Hermjakob,":[81],"H,":[82],"first":[88],"10":[89],"years":[90],"international":[93],"coordination":[94],"network":[95],"systems":[99,146,210,260],"and":[100,135,147,211,215,219,261,265],"synthetic":[101,148,212,262],"(COMBINE).":[103],"J":[104,224,269],"Integr":[105,225,270],"Bioinform":[106,226,271],"2020;17:20200005.":[107],"https://doi.org/10.1515/jib-2020-0005.Search":[108],"href=\"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0015/html#j_jib-2024-0015_ref_002\"":[116],"data-bs-target=\"j_jib-2024-0015_ref_002\"":[117],"data-bs-toggle=\"tooltip\">2</a>].":[118],"It":[119],"coordinates":[120],"standard":[121],"support":[124],"associated":[126],"projects":[127],"towards":[128],"establishing":[129],"a":[130,156],"suite":[131],"compatible,":[133],"interoperable":[134],"comprehensive":[136,157],"that":[138],"address":[139],"full":[141],"spectrum":[142],"biology.":[149],"link-fig\"":[152],"href=\"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0015/html#j_jib-2024-0015_fig_001\"":[153],"data-bs-target=\"j_jib-2024-0015_fig_001\">Figure&nbsp;1</a>":[154],"provides":[155],"view":[158],"along":[163],"with":[164],"related":[165],"efforts.":[166],"Special":[167],"issues":[168],"focusing":[169],"on":[170],"have":[173],"been":[174],"released":[175],"regularly":[176],"since":[177],"2016,":[178],"offering":[179],"updates":[180],"from":[181],"2015":[182],"through":[183],"2023":[184],"as":[185],"documented":[186],"title=\"3.":[191],"K&ouml;nig,":[192],"Gorochowski,":[198,248],"TE,":[199,249],"Keating,":[202,252],"SM,":[203,253],"Specifications":[206,256],"status":[214,264],"developments":[216,266],"2022":[218],"meeting":[222],"2022.":[223],"2023;20:20230004.":[227],"https://doi.org/10.1515/jib-2023-0004.Search":[228],"href=\"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0015/html#j_jib-2024-0015_ref_003\"":[236],"data-bs-target=\"j_jib-2024-0015_ref_003\"":[237],"data-bs-toggle=\"tooltip\">3</a>&ndash;<a":[238],"title=\"9.":[241],"Schreiber,":[242],"F,":[243],"2021.":[268],"2021;18:20210026.":[272],"https://doi.org/10.1515/jib-2021-0026.Search":[273],"href=\"https://www.degruyterbrill.com/document/doi/10.1515/jib-2024-0015/html#j_jib-2024-0015_ref_009\"":[281],"data-bs-target=\"j_jib-2024-0015_ref_009\"":[282],"data-bs-toggle=\"tooltip\">9</a>].":[283],"&nbsp;":[284]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
