{"id":"https://openalex.org/W4390265064","doi":"https://doi.org/10.1515/jib-2023-0026","title":"PharmoCo: a graph-based visualization of pharmacogenomic plausibility check reports for clinical decision support systems","display_name":"PharmoCo: a graph-based visualization of pharmacogenomic plausibility check reports for clinical decision support systems","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4390265064","doi":"https://doi.org/10.1515/jib-2023-0026","pmid":"https://pubmed.ncbi.nlm.nih.gov/38150373"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2023-0026","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1515/jib-2023-0026","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0026/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0026/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093589343","display_name":"Lena Raupach","orcid":"https://orcid.org/0009-0009-7633-2056"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lena Raupach","raw_affiliation_strings":["Faculty of Technology, Bioinformatics/Medical Informatics Department , Bielefeld University , D-33501 Bielefeld , Germany","ID Information und Dokumentation im Gesundheitswesen GmbH & Co. KGaA , D-10115 Berlin , Germany"],"raw_orcid":"https://orcid.org/0009-0009-7633-2056","affiliations":[{"raw_affiliation_string":"Faculty of Technology, Bioinformatics/Medical Informatics Department , Bielefeld University , D-33501 Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"ID Information und Dokumentation im Gesundheitswesen GmbH & Co. KGaA , D-10115 Berlin , Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002979041","display_name":"Cassandra K\u00f6nigs","orcid":"https://orcid.org/0000-0001-8991-9272"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Cassandra K\u00f6nigs","raw_affiliation_strings":["Faculty of Technology, Bioinformatics/Medical Informatics Department , Bielefeld University , D-33501 Bielefeld , Germany"],"raw_orcid":"https://orcid.org/0000-0001-8991-9272","affiliations":[{"raw_affiliation_string":"Faculty of Technology, Bioinformatics/Medical Informatics Department , Bielefeld University , D-33501 Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5093589343"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.26984351,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.8525110483169556},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.789503276348114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.69915372133255},{"id":"https://openalex.org/keywords/medical-prescription","display_name":"Medical prescription","score":0.4818900227546692},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4766691029071808},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.4720381498336792},{"id":"https://openalex.org/keywords/decision-support-system","display_name":"Decision support system","score":0.4469868838787079},{"id":"https://openalex.org/keywords/clinical-decision-support-system","display_name":"Clinical decision support system","score":0.4114833474159241},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3046300411224365},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2449604570865631},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.11921101808547974},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.08183079957962036}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.8525110483169556},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.789503276348114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.69915372133255},{"id":"https://openalex.org/C2426938","wikidata":"https://www.wikidata.org/wiki/Q3355478","display_name":"Medical prescription","level":2,"score":0.4818900227546692},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4766691029071808},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.4720381498336792},{"id":"https://openalex.org/C107327155","wikidata":"https://www.wikidata.org/wiki/Q330268","display_name":"Decision support system","level":2,"score":0.4469868838787079},{"id":"https://openalex.org/C63527458","wikidata":"https://www.wikidata.org/wiki/Q5133829","display_name":"Clinical decision support system","level":3,"score":0.4114833474159241},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3046300411224365},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2449604570865631},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.11921101808547974},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.08183079957962036},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020000","descriptor_name":"Decision Support Systems, Clinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020000","descriptor_name":"Decision Support Systems, Clinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020000","descriptor_name":"Decision Support Systems, Clinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020000","descriptor_name":"Decision Support Systems, Clinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020000","descriptor_name":"Decision Support Systems, Clinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2023-0026","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1515/jib-2023-0026","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0026/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38150373","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38150373","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10777363","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10777363","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10777363/pdf/jib-20-4-jib-2023-0026.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4e6fd2bfc3b84c0593b2ad8320982495","is_oa":true,"landing_page_url":"https://doaj.org/article/4e6fd2bfc3b84c0593b2ad8320982495","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 20, Iss 4, Pp 1189976-90 (2023)","raw_type":"article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2985551","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2985551","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1515/jib-2023-0026","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1515/jib-2023-0026","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0026/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8299999833106995}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390265064.pdf","grobid_xml":"https://content.openalex.org/works/W4390265064.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W57046154","https://openalex.org/W1513910469","https://openalex.org/W2014157754","https://openalex.org/W2015536184","https://openalex.org/W2108825946","https://openalex.org/W2158864490","https://openalex.org/W2803317679","https://openalex.org/W3097351928","https://openalex.org/W3175801695","https://openalex.org/W3201797936","https://openalex.org/W4285031001","https://openalex.org/W4318250429","https://openalex.org/W4377107196","https://openalex.org/W6908917421"],"related_works":["https://openalex.org/W2791082178","https://openalex.org/W2593910894","https://openalex.org/W2046929026","https://openalex.org/W2779278343","https://openalex.org/W2533987749","https://openalex.org/W1996434451","https://openalex.org/W1569026615","https://openalex.org/W2791725133","https://openalex.org/W2112831187","https://openalex.org/W2122149485"],"abstract_inverted_index":{"The":[0,88],"first":[1],"approaches":[2],"in":[3,21,29,65],"recent":[4],"years":[5],"for":[6,78],"the":[7,22,33,36,40,44,70,74,92,97,101,112,118],"integration":[8],"of":[9,32,39,73,105],"pharmacogenomic":[10,63],"plausibility":[11],"checks":[12],"into":[13],"clinical":[14],"practice":[15],"show":[16],"both":[17],"a":[18,79],"promising":[19],"improvement":[20],"drug":[23,119],"therapy":[24,120],"safety,":[25],"but":[26],"also":[27],"difficulties":[28,34],"application.":[30],"One":[31],"is":[35],"meaningful":[37],"interpretation":[38,81],"text-based":[41],"results":[42],"by":[43],"medical":[45,102],"practitioner.":[46],"We":[47],"propose":[48],"here":[49],"as":[50],"an":[51],"appropriate":[52],"and":[53,59,82,107,115],"sensible":[54],"solution":[55],"to":[56,60],"avoid":[57],"misunderstandings":[58],"include":[61],"evidence-based,":[62],"recommendations":[64],"prescriptions,":[66],"which":[67],"should":[68],"be":[69],"graph-based":[71],"visualization":[72,99],"reports.":[75],"This":[76],"allows":[77],"plausible":[80],"relate":[83],"complex,":[84],"even":[85],"contradictory":[86],"guidelines.":[87],"improved":[89],"overview":[90],"over":[91],"pharmacogenomics":[93],"(PGx)":[94],"guidelines":[95],"using":[96],"graphical":[98],"makes":[100],"practitioner's":[103],"choice":[104],"dose":[106],"medication":[108],"more":[109],"patient-specific,":[110],"improves":[111],"treatment":[113],"outcome":[114],"thus,":[116],"increases":[117],"safety.":[121]},"counts_by_year":[],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2025-10-10T00:00:00"}
