{"id":"https://openalex.org/W4389312374","doi":"https://doi.org/10.1515/jib-2023-0021","title":"TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus","display_name":"TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus","publication_year":2023,"publication_date":"2023-12-04","ids":{"openalex":"https://openalex.org/W4389312374","doi":"https://doi.org/10.1515/jib-2023-0021","pmid":"https://pubmed.ncbi.nlm.nih.gov/38047898"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2023-0021","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2023-0021","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0021/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0021/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021744709","display_name":"Avery Mecham","orcid":"https://orcid.org/0000-0002-6103-4445"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avery Mecham","raw_affiliation_strings":["Department of Biology , Brigham Young University , Provo , UT , 84602 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology , Brigham Young University , Provo , UT , 84602 , USA","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055918415","display_name":"Ashlie Stephenson","orcid":null},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashlie Stephenson","raw_affiliation_strings":["Department of Biology , Brigham Young University , Provo , UT , 84602 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology , Brigham Young University , Provo , UT , 84602 , USA","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074212490","display_name":"Bad\u00ed Quinteros","orcid":null},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Badi I. Quinteros","raw_affiliation_strings":["Department of Biology , Brigham Young University , Provo , UT , 84602 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology , Brigham Young University , Provo , UT , 84602 , USA","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104208015","display_name":"Grace S. Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grace S. Brown","raw_affiliation_strings":["Department of Biology , Brigham Young University , Provo , UT , 84602 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology , Brigham Young University , Provo , UT , 84602 , USA","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005005415","display_name":"Stephen Piccolo","orcid":"https://orcid.org/0000-0003-2001-5640"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stephen R. Piccolo","raw_affiliation_strings":["Department of Biology , Brigham Young University , Provo , UT , 84602 , USA"],"raw_orcid":"https://orcid.org/0000-0003-2001-5640","affiliations":[{"raw_affiliation_string":"Department of Biology , Brigham Young University , Provo , UT , 84602 , USA","institution_ids":["https://openalex.org/I100005738"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5005005415"],"corresponding_institution_ids":["https://openalex.org/I100005738"],"apc_list":{"value":1050,"currency":"EUR","value_usd":1187},"apc_paid":{"value":1050,"currency":"EUR","value_usd":1187},"fwci":0.9195,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.72773133,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"21","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48132526874542236},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.42222893238067627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38199353218078613},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3483162522315979},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3240665793418884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2334272265434265},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19928106665611267}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48132526874542236},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.42222893238067627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38199353218078613},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3483162522315979},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3240665793418884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2334272265434265},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19928106665611267}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2023-0021","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2023-0021","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0021/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38047898","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38047898","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11294518","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11294518","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11294518/pdf/jib-21-1-jib-2023-0021.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:scholarsarchive.byu.edu:facpub-8250","is_oa":false,"landing_page_url":"https://scholarsarchive.byu.edu/facpub/7343","pdf_url":null,"source":{"id":"https://openalex.org/S4377196308","display_name":"ScholarsArchive  (Brigham Young University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I100005738","host_organization_name":"Brigham Young University","host_organization_lineage":["https://openalex.org/I100005738"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:8cb4182cc39541cc9148bbc148271b76","is_oa":true,"landing_page_url":"https://doaj.org/article/8cb4182cc39541cc9148bbc148271b76","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 21, Iss 1, Pp D562-6 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jib-2023-0021","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2023-0021","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0021/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389312374.pdf","grobid_xml":"https://content.openalex.org/works/W4389312374.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1544923801","https://openalex.org/W1959116137","https://openalex.org/W1996353737","https://openalex.org/W2020541351","https://openalex.org/W2060173830","https://openalex.org/W2100239923","https://openalex.org/W2101696428","https://openalex.org/W2111675378","https://openalex.org/W2118258530","https://openalex.org/W2124813591","https://openalex.org/W2137632714","https://openalex.org/W2148268384","https://openalex.org/W2150791259","https://openalex.org/W2154097321","https://openalex.org/W2165446840","https://openalex.org/W2167980479","https://openalex.org/W2169387435","https://openalex.org/W2170134016","https://openalex.org/W2302501749","https://openalex.org/W2473568977","https://openalex.org/W2475414235","https://openalex.org/W2524066112","https://openalex.org/W2534588488","https://openalex.org/W2734646376","https://openalex.org/W2754937980","https://openalex.org/W2805148386","https://openalex.org/W2886717963","https://openalex.org/W2888598589","https://openalex.org/W2894548036","https://openalex.org/W2949583997","https://openalex.org/W2950750198","https://openalex.org/W2951092176","https://openalex.org/W2951403620","https://openalex.org/W2951527568","https://openalex.org/W2953067954","https://openalex.org/W2963153672","https://openalex.org/W2970825979","https://openalex.org/W2981350712","https://openalex.org/W3100689701","https://openalex.org/W3118393359","https://openalex.org/W3130317325","https://openalex.org/W3206290255","https://openalex.org/W4200301447","https://openalex.org/W4235243453","https://openalex.org/W4242289937","https://openalex.org/W4242743062","https://openalex.org/W4282943120"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2803323662","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":{"TidyGEO":[0],"is":[1,105],"a":[2,18,50],"Web-based":[3],"tool":[4],"for":[5,39,93,154],"downloading,":[6],"tidying,":[7],"and":[8,75,87,117,171,185],"reformatting":[9],"data":[10,23,47,67,169],"series":[11,84,99],"from":[12,24,82,121],"Gene":[13],"Expression":[14],"Omnibus":[15],"(GEO).":[16],"As":[17],"freely":[19],"accessible":[20],"repository":[21],"with":[22,179],"over":[25],"6":[26],"million":[27],"biological":[28],"samples":[29],"across":[30],"more":[31],"than":[32],"4000":[33],"organisms,":[34],"GEO":[35,98],"provides":[36],"diverse":[37],"opportunities":[38],"secondary":[40],"research.":[41],"Although":[42],"scientists":[43,133],"may":[44,109],"find":[45],"assay":[46,66,180,183],"relevant":[48],"to":[49,85,138,191],"given":[51],"research":[52,123],"question,":[53],"most":[54],"analyses":[55],"require":[56],"sample-level":[57,155],"annotations.":[58],"In":[59],"GEO,":[60],"such":[61,140,157],"annotations":[62,79,89,178],"are":[63,90,114],"stored":[64],"alongside":[65],"in":[68],"delimited,":[69],"text-based":[70],"files.":[71],"However,":[72],"the":[73,78,135],"structure":[74],"semantics":[76],"of":[77],"vary":[80],"widely":[81],"one":[83],"another,":[86],"many":[88,132],"not":[91],"useful":[92],"analysis":[94],"purposes.":[95],"Thus,":[96],"every":[97],"must":[100],"be":[101,110,129],"tidied":[102],"before":[103],"it":[104],"analyzed.":[106],"Manual":[107],"approaches":[108],"used,":[111],"but":[112,131],"these":[113,144,193],"error":[115],"prone":[116],"take":[118],"time":[119],"away":[120],"other":[122],"tasks.":[124],"Custom":[125],"computer":[126],"scripts":[127],"can":[128,176],"written,":[130],"lack":[134],"computational":[136],"expertise":[137],"create":[139],"scripts.":[141],"To":[142],"address":[143],"challenges,":[145],"we":[146],"created":[147],"TidyGEO,":[148],"which":[149],"supports":[150],"essential":[151],"data-cleaning":[152],"tasks":[153],"annotations,":[156],"as":[158],"selecting":[159],"informative":[160],"columns,":[161,163,167],"renaming":[162],"splitting":[164],"or":[165],"merging":[166],"standardizing":[168],"values,":[170],"filtering":[172],"samples.":[173],"Additionally,":[174],"users":[175],"integrate":[177],"data,":[181,184],"restructure":[182],"generate":[186],"code":[187],"that":[188],"enables":[189],"others":[190],"reproduce":[192],"steps.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-22T07:34:49.880490","created_date":"2025-10-10T00:00:00"}
