{"id":"https://openalex.org/W4327737124","doi":"https://doi.org/10.1515/jib-2023-0003","title":"CellML 2.0.1","display_name":"CellML 2.0.1","publication_year":2023,"publication_date":"2023-03-01","ids":{"openalex":"https://openalex.org/W4327737124","doi":"https://doi.org/10.1515/jib-2023-0003"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2023-0003","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2023-0003","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0003/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0003/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085961856","display_name":"Michael Clerx","orcid":"https://orcid.org/0000-0003-4062-3061"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael Clerx","raw_affiliation_strings":["University of Nottingham , Nottingham , UK"],"affiliations":[{"raw_affiliation_string":"University of Nottingham , Nottingham , UK","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090837240","display_name":"Michael T. Cooling","orcid":"https://orcid.org/0000-0002-3417-0177"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Michael T. Cooling","raw_affiliation_strings":["University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027917052","display_name":"Jonathan Cooper","orcid":"https://orcid.org/0000-0001-6009-3542"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan Cooper","raw_affiliation_strings":["University College London , London , UK"],"affiliations":[{"raw_affiliation_string":"University College London , London , UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073607042","display_name":"Alan Garny","orcid":"https://orcid.org/0000-0001-7606-5888"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Alan Garny","raw_affiliation_strings":["University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071859477","display_name":"Keri Moyle","orcid":"https://orcid.org/0000-0002-7178-2631"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Keri Moyle","raw_affiliation_strings":["University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086460310","display_name":"David Nickerson","orcid":"https://orcid.org/0000-0003-4667-9779"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"David P. Nickerson","raw_affiliation_strings":["University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087987376","display_name":"Poul M. F. Nielsen","orcid":"https://orcid.org/0000-0002-4704-0179"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Poul M. F. Nielsen","raw_affiliation_strings":["University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044859481","display_name":"Hugh Sorby","orcid":"https://orcid.org/0000-0001-8991-4703"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Hugh Sorby","raw_affiliation_strings":["University of Auckland , Auckland , New Zealand"],"affiliations":[{"raw_affiliation_string":"University of Auckland , Auckland , New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5086460310"],"corresponding_institution_ids":["https://openalex.org/I154130895"],"apc_list":null,"apc_paid":null,"fwci":0.1579,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57057425,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"20","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13362","display_name":"Slime Mold and Myxomycetes Research","score":0.9115999937057495,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8108084201812744},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.6709846258163452},{"id":"https://openalex.org/keywords/formal-specification","display_name":"Formal specification","score":0.5096096992492676},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.47592785954475403},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4351906478404999},{"id":"https://openalex.org/keywords/unified-modeling-language","display_name":"Unified Modeling Language","score":0.4238080084323883},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4108186364173889},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38962501287460327},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37688514590263367},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3674101233482361},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24664941430091858}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8108084201812744},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.6709846258163452},{"id":"https://openalex.org/C116253237","wikidata":"https://www.wikidata.org/wiki/Q1437424","display_name":"Formal specification","level":2,"score":0.5096096992492676},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.47592785954475403},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4351906478404999},{"id":"https://openalex.org/C145644426","wikidata":"https://www.wikidata.org/wiki/Q169411","display_name":"Unified Modeling Language","level":3,"score":0.4238080084323883},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4108186364173889},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38962501287460327},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37688514590263367},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3674101233482361},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24664941430091858},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1515/jib-2023-0003","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2023-0003","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0003/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10063175","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10063175","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10063175/pdf/jib-20-1-jib-2023-0003.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:075b2f72014747acb1a2fb4169d95a1e","is_oa":true,"landing_page_url":"https://doaj.org/article/075b2f72014747acb1a2fb4169d95a1e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 20, Iss 1 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jib-2023-0003","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2023-0003","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2023-0003/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4327737124.pdf"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1487338715","https://openalex.org/W1633369931","https://openalex.org/W1744779065"],"related_works":["https://openalex.org/W4388713123","https://openalex.org/W3194438104","https://openalex.org/W2570592793","https://openalex.org/W2753140600","https://openalex.org/W2354135050","https://openalex.org/W2592399342","https://openalex.org/W2125996595","https://openalex.org/W2069597759","https://openalex.org/W1911633385","https://openalex.org/W2620193245"],"abstract_inverted_index":{"Abstract":[0],"We":[1],"present":[2,145],"here":[3],"CellML":[4,21,61,73,99,103,148],"2.0.1,":[5],"an":[6],"XML-based":[7],"language":[8],"for":[9,90],"describing":[10],"and":[11,43,75,142],"exchanging":[12],"mathematical":[13],"models":[14,54,104],"of":[15,30,34,37,58,93,102,112,125,131,139],"physiological":[16],"systems.":[17],"MathML":[18],"embedded":[19],"in":[20,146],"documents":[22],"is":[23,63,87],"used":[24],"to":[25,55,107],"define":[26],"the":[27,66,72,76,91,109,113,120,126,137,147],"underlying":[28],"mathematics":[29],"models.":[31],"Models":[32,50],"consist":[33],"a":[35],"network":[36],"reusable":[38],"components,":[39],"each":[40],"with":[41,123,129],"variables":[42],"equations":[44],"giving":[45],"relationships":[46],"between":[47],"those":[48],"variables.":[49],"may":[51,105],"import":[52],"other":[53],"create":[56],"systems":[57],"increasing":[59],"complexity.":[60],"2.0.1":[62],"defined":[64],"by":[65,78],"normative":[67,85,121],"specification":[68,86,114,122],"presented":[69],"here,":[70],"prescribing":[71],"syntax":[74],"rules":[77,127],"which":[79,96,118],"it":[80],"should":[81],"be":[82],"used.":[83],"The":[84],"intended":[88],"primarily":[89],"developers":[92],"software":[94],"tools":[95],"directly":[97],"consume":[98],"syntax.":[100],"Users":[101],"prefer":[106],"browse":[108],"informative":[110],"rendering":[111],"(":[115],"https://cellml.org/specifications/cellml_2.0/":[116],")":[117],"extends":[119],"explanations":[124],"combined":[128],"examples":[130],"their":[132],"usage.":[133],"This":[134],"version":[135],"improves":[136],"identification":[138],"rule":[140],"statements":[141],"corrects":[143],"errata":[144],"2.0":[149],"specification.":[150]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2023-03-18T00:00:00"}
